| Protein: | MBD1_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 204 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MBD1_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
260.0 | [0..7] | [200..1] |
|
Region A: Residues: [1-93] |
1 11 21 31 41 51
| | | | | |
1 MLPFPAMNLK KSRSENSSVA SSGSKIEEQT EKSAEPTTIK VQKKAGTPGR SIDVFAVQCE 60
61 KCMKWRKIDT QDEYEDIRSR VQEDPFFCKT KEG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.383 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
| View | Download | 0.238 | a.48.3 | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 |
| View | Download | 0.238 | a.39.1 | EF-hand |
| View | Download | 0.226 | a.23.4 | Mitochondrial import receptor subunit Tom20 |
|
Region A: Residues: [94-204] |
1 11 21 31 41 51
| | | | | |
1 VSCEDVGDLN YDSSRTWVID KPGLPRTPRG FKRSLILRKD YSKMDAYYIT PTGKKLKSRN 60
61 EIAAFIDANQ DYKYALLGDF NFTVPKVMEE TVPSGILSDR TPKPSRKVTI D
|
| Detection Method: | |
| Confidence: | 21.045757 |
| Match: | 1ub1A |
| Description: | Solution structure of the matrix attachment region-binding domain of chicken MeCP2 |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.339357445627225 | bayes_pls_golite062009 |
