YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17939137, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17939137, gi|....

Description	E-value	Query Range	Subject Range
gi\|5042189 - gi\|5042189\|emb\|CAB44634.1\| hypothetical protein [Agrobacterium tumefaciens]	293.0	[0..1]	[231..1]
gi\|16119821, gi\|... - gi\|16119821\|ref\|NP_396526.1\| indole-3-lactate synthase [Agrobacterium tumefaciens str. C58], gi\|1516... gi\|5042193 - gi\|5042193\|emb\|CAB44638.1\| hypothetical protein [Agrobacterium tumefaciens]	262.0	[0..2]	[214..1]
gi\|1814324 - gi\|1814324\|gb\|AAB41873.1\| 5 [Agrobacterium vitis]	245.0	[0..2]	[214..1]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMVYQRPVFT VISLLRIRNR EEAKLVLIGA VVVYRNFVEQ TLADAQKNWV KSLVLYDDPG  60
   61 DAVTGILTWF SRYACLHGPR LGPLDTIAVN DNPLYIYCPR RKLEEYAKER IVSFHSEIGS 120
  121 VVCSMSPFDA GVTREKVRYG HNLISPGSCL LPDALEAYVA FLPSKSFLKL PYSVYEVHND 180
  181 RYVHKFFALL PGSRFHFEVV AVGLAYPAAK KRPSGLGILR CCFTGKTNTC L

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits