YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|17939136, gi\|...
Organism:	Agrobacterium tumefaciens str. C58
Length:	243 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17939136, gi|....

Description	E-value	Query Range	Subject Range
gi\|5042188 - gi\|5042188\|emb\|CAB44633.1\| hypothetical protein [Agrobacterium tumefaciens]	288.0	[0..1]	[243..1]
gi\|16119821, gi\|... - gi\|16119821\|ref\|NP_396526.1\| indole-3-lactate synthase [Agrobacterium tumefaciens str. C58], gi\|1516... gi\|5042193 - gi\|5042193\|emb\|CAB44638.1\| hypothetical protein [Agrobacterium tumefaciens]	263.0	[0..17]	[227..3]
gi\|742096, gi\|10... - gi\|742096\|prf\|\|2009229C rolB gene, pir\|\|JC2106 rolB protein - Agrobacterium rhizogenes plasmid pRi17...	262.0	[0..7]	[236..10]
gi\|1814324 - gi\|1814324\|gb\|AAB41873.1\| 5 [Agrobacterium vitis]	249.0	[0..17]	[231..3]

Back

Predicted Domain #1

Region A:
Residues: [1-243]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHTSLMSYNQ NMIPSGDDRP VFPTIDLFAN TSLEELQQSL CAAVANYRDF LTRKILPFQQ  60
   61 SWVVRVLSES GLDEETLRAI KSCVFTPCCS IPGAVQPDRI CQHDSPIYIY TSLNLLSQYV 120
  121 EGKTLLRCYR KFVLASSLPP YRTDIPAEEL KNVLNSILPG AYSMPHAVSC FVAILPSKKF 180
  181 TISMSKITTR GGAEEHFVVF SREENDIIPY DIVAVGKTLF SQSDEEFGLP NLSFDELQNL 240
  241 IST

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits