YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15807735, gi\|...
Organism:	Deinococcus radiodurans R1
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15807735, gi|....

Description	E-value	Query Range	Subject Range
gi\|66781233, gi\|... - gi\|94984916\|ref\|YP_604280.1\| 3-oxoacid CoA-transferase, subunit B [Deinococcus geothermalis DSM 1130...	2.0E-68	[1..207]	[1..207]
gi\|167350239, gi... - gi\|167647809\|ref\|YP_001685472.1\| 3-oxoacid CoA-transferase, B subunit [Caulobacter sp. K31], gi\|1673...	7.0E-68	[1..207]	[1..209]
gi\|67153672 - gi\|67153672\|ref\|ZP_00415417.1\| 3-oxoacid CoA-transferase [Azotobacter vinelandii AvOP] gi\|67153672, gi\|... - gi\|67153672\|ref\|ZP_00415417.1\| 3-oxoacid CoA-transferase [Azotobacter vinelandii AvOP], gi\|67087805\|...	1.0E-67	[1..207]	[1..207]
gi\|115379577, gi... - gi\|115379577\|ref\|ZP_01466665.1\| succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B [Stigmatell...	1.0E-67	[1..208]	[1..208]
gi\|56478100, gi\|... - gi\|56478100\|ref\|YP_159689.1\| succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B [Aromatoleum a...	4.0E-67	[1..207]	[1..207]
gi\|108756835, gi... - gi\|108756835\|ref\|YP_631971.1\| 3-oxoacid CoA-transferase subunit B [Myxococcus xanthus DK 1622], gi\|1...	1.0E-66	[1..207]	[1..207]
gi\|91784432, gi\|... - gi\|91784432\|ref\|YP_559638.1\| butyryl-CoA:acetate CoA transferase [Burkholderia xenovorans LB400], gi...	5.0E-66	[1..207]	[1..207]
gi\|5209338 - gi\|5209338\|gb\|AAD40813.1\|AF109386_2 succinyl CoA:3-oxoadipate CoA transferase beta subunit; PcaJ [St... gi\|11262170 - pir\|\|T47110 3-oxoadipate CoA-transferase (EC 2.8.3.6) beta chain [imported] - Streptomyces sp	7.0E-66	[1..207]	[1..207]
gi\|220964598, gi... - gi\|221235425\|ref\|YP_002517862.1\| acetate/3-ketoacid CoA transferase, subunit B [Caulobacter crescent... gi\|25288830 - pir\|\|E87547 3-oxoadipate CoA-transferase, beta subunit [imported] - Caulobacter crescentus gi\|13423945, gi\|... - gi\|16126645\|ref\|NP_421209.1\| 3-oxoadipate CoA-transferase, beta subunit [Caulobacter crescentus CB15...	8.0E-66	[1..203]	[1..205]
gi\|83725025, gi\|... - gi\|83748293\|ref\|ZP_00945318.1\| Hypothetical Protein RRSL_02595 [Ralstonia solanacearum UW551], gi\|83... gi\|207724047, gi... - gi\|207724047\|ref\|YP_002254445.1\| succinyl-coa:3-ketoacid-coenzyme a transferase subunit b protein [R... gi\|207742940, gi... - gi\|207742940\|ref\|YP_002259332.1\| succinyl-coa:3-ketoacid-coenzyme a transferase subunit b protein [R...	1.0E-65	[1..207]	[1..211]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPWTRDEMAA RAAQELQDGY YVNLGIGLPT LVANHIPAGM SVWLQSENGL LGIGPFPTED  60
   61 EVDPDLINAG KQTVTALPGA SFFSSADSFA MIRGGHVNLA ILGAMQVSET GDLANWMIPG 120
  121 KMVKGMGGAM DLVAGVQRVV VLMEHVAKGD AHKILRECTL PLTGQGVVDR IITDLGVLDV 180
  181 TPQGLKLVEL APGVTLDELR QKTGADIHE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.30103
Match:	1oozA
Description:	Deletion mutant of SUCCINYL-COA:3-KETOACID COA TRANSFERASE FROM PIG HEART
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-oxoacid CoA-transferase activity	2.22792536321983	bayes_pls_golite062009
catalytic activity	1.68776709414398	bayes_pls_golite062009
CoA-transferase activity	0.50782945985068	bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups	0.18413827683017	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: