YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7473996
Organism:	Deinococcus radiodurans
Length:	195 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7473996.

Description	E-value	Query Range	Subject Range
gi\|33577088, gi\|... - gi\|33602646\|ref\|NP_890206.1\| transcription regulator AsnC [Bordetella bronchiseptica RB50], gi\|33577...	1.0E-45	[34..195]	[18..179]
gi\|33574172 - gi\|33574172\|emb\|CAE38504.1\| AsnC-family transcriptional regulator [Bordetella parapertussis] gi\|33597744 - gi\|33597744\|ref\|NP_885387.1\| transcription regulator AsnC [Bordetella parapertussis 12822]	6.0E-45	[34..195]	[1..162]
gi\|33571902, gi\|... - gi\|33592257\|ref\|NP_879901.1\| transcription regulator AsnC [Bordetella pertussis Tohama I], gi\|335719...	2.0E-44	[38..195]	[1..158]
gi\|83716630, gi\|... - gi\|83716630\|ref\|YP_438870.1\| bkd operon transcriptional regulator [Burkholderia thailandensis E264],...	1.0E-43	[28..193]	[47..212]
gi\|76583520, gi\|... - gi\|76819047\|ref\|YP_335941.1\| bkd operon transcriptional regulator [Burkholderia pseudomallei 1710b],...	2.0E-43	[35..193]	[54..212]
gi\|34102276, gi\|... - gi\|34496423\|ref\|NP_900638.1\| AsnC family transcriptional regulator [Chromobacterium violaceum ATCC 1...	2.0E-43	[38..194]	[1..157]
gi\|89093684, gi\|... - gi\|89093684\|ref\|ZP_01166631.1\| transcriptional regulatory protein [Oceanospirillum sp. MED92], gi\|89...	3.0E-43	[41..193]	[8..160]
gi\|120554653, gi... - gi\|77952851\|ref\|ZP_00817263.1\| regulatory proteins, AsnC/Lrp [Marinobacter aquaeolei VT8], gi\|778681...	4.0E-43	[39..193]	[7..162]
gi\|48783194, gi\|... - gi\|91781074\|ref\|YP_556281.1\| AsnC family transcriptional regulator [Burkholderia xenovorans LB400], ...	4.0E-43	[36..193]	[1..158]
gi\|90324070, gi\|... - gi\|90414827\|ref\|ZP_01222794.1\| putative transcriptional regulator, AsnC family protein [Photobacteri...	4.0E-43	[40..192]	[1..153]

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Predicted Domain #1

Region A:
Residues: [1-195]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLAGPLLTAI ATSKNFAAFF ATRLRPAGYF EGEMSNSRPF PDLDPTDRQI LSILQRDARI  60
   61 ANTELADEIG LTPAPTLRRV RRLEEEGVIH RYVALLDPKL VNRDLMVMVR VTLDKQTKQG 120
  121 FQDFAEHMRA RPEVLECYLC LGDTDYLLKV CVPNLDAYQR FLVDVLAAIP GVRNTDSTIV 180
  181 VKQEKYTTSL PLDEG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.045757
Match:	2gqqA
Description:	No description for 2gqqA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits