YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7471663
Organism:	Deinococcus radiodurans
Length:	368 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7471663.

Description	E-value	Query Range	Subject Range
gi\|66781994, gi\|... - gi\|94984567\|ref\|YP_603931.1\| hypothetical protein Dgeo_0459 [Deinococcus geothermalis DSM 11300], gi...	0.0	[7..365]	[4..361]
gi\|32473152, gi\|... - gi\|32473152\|ref\|NP_866146.1\| hypothetical protein RB4512 [Rhodopirellula baltica SH 1], gi\|32397831\|...	2.0E-84	[18..352]	[30..386]
gi\|62391097, gi\|... - gi\|62391097\|ref\|YP_226499.1\| ABC transporter ATPase [Corynebacterium glutamicum ATCC 13032], gi\|4132...	4.0E-81	[44..313]	[31..302]
gi\|25028707, gi\|... - gi\|25028707\|ref\|NP_738761.1\| hypothetical protein CE2151 [Corynebacterium efficiens YS-314], gi\|2349...	3.0E-79	[44..313]	[37..313]
gi\|70992257, gi\|... - gi\|70992257\|ref\|XP_750977.1\| actin cytoskeleton organization protein App1 [Aspergillus fumigatus Af2...	8.0E-68	[80..342]	[249..507]
gi\|67516647, gi\|... - gi\|67516647\|ref\|XP_658209.1\| hypothetical protein AN0605.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	4.0E-67	[80..322]	[485..725]
gi\|38106124, gi\|... - gi\|39940150\|ref\|XP_359612.1\| hypothetical protein MGG_05165 [Magnaporthe grisea 70-15], gb\|EAA52473....	1.0E-66	[37..358]	[135..473]
gi\|28918801, gi\|... - gi\|32403416\|ref\|XP_322321.1\| hypothetical protein [Neurospora crassa], gi\|28918801\|gb\|EAA28470.1\| hy... gi\|85086591 - gi\|85086591\|ref\|XP_957706.1\| hypothetical protein [Neurospora crassa OR74A]	1.0E-66	[84..327]	[1325..1566]
gi\|28410668, gi\|... - gi\|28572536\|ref\|NP_789316.1\| hypothetical protein TW383 [Tropheryma whipplei TW08/27], gi\|28410668\|e... gi\|28476395, gi\|... - gi\|28493354\|ref\|NP_787515.1\| DedA-like protein [Tropheryma whipplei str. Twist], gi\|28476395\|gb\|AAO4...	2.0E-66	[37..308]	[233..526]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPAEIAKTA FKSLLPVLER GVVAADRAFS GYIQPRRLRG KLLLQPYVGW GTPREVELTG  60
   61 RVLLPRALAP ARKGDPRWRN FHNIVRRLFS REVGGVRVAG TL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [103-368]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDQTVSAVSD SDGYFTLHFT FPRPIAAGWH EVRLQMEDRQ EDAARARVQV VGKARFGIIS  60
   61 DLDDTVIQSD VTSLPRMLMT SLTGNARTRS PFPGVGALYR ALTREGEARN PIFYVSSSPW 120
  121 NFFDLLWQFL DYRRIPLGPL FLRNWGMDLL GGHGGYKHGV IERIFHRYPN LNFVLVGDSG 180
  181 EKDPEIYAEV VRRFPGRVLA VYIRDVTGAE RDEGVLRLRE EIRKAGADLV LASDSLSAAG 240
  241 HALALGLITP GEYRSVLTSV ARTYET

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.6
Match:	2i33A
Description:	No description for 2i33A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits