YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6458096, gi\|1...
Organism:	Deinococcus radiodurans R1
Length:	80 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6458096, gi|1....

Description	E-value	Query Range	Subject Range
gi\|17132307, gi\|... - gi\|17230704\|ref\|NP_487252.1\| cell growth regulatory protein [Nostoc sp. PCC 7120], gi\|17132307\|dbj\|B... gi\|25532381 - pir\|\|AE2207 cell growth regulatory protein mazE [imported] - Nostoc sp. (strain PCC 7120)	4.0E-25	[1..80]	[1..80]
gi\|75704791, gi\|... - gi\|75911066\|ref\|YP_325362.1\| transcriptional regulator/antitoxin MazE [Anabaena variabilis ATCC 2941...	2.0E-24	[1..80]	[1..80]
gi\|31616033 - gi\|31616033\|pdb\|1UB4\|C Chain C, Crystal Structure Of Mazef Complex	2.0E-20	[1..80]	[5..85]
gi\|74313355, gi\|... - gi\|74313355\|ref\|YP_311774.1\| antitoxin MazE [Shigella sonnei Ss046], gi\|73856832\|gb\|AAZ89539.1\| supp... gi\|188495662, gi... - gi\|75511926\|ref\|ZP_00734529.1\| COG2336: Growth regulator [Escherichia coli 53638], gi\|188495662\|ref\|... gi\|191171120, gi... - gi\|75241827\|ref\|ZP_00725646.1\| COG2336: Growth regulator [Escherichia coli F11], gi\|191171120\|ref\|ZP... gi\|193071123, gi... - gi\|75233991\|ref\|ZP_00718440.1\| COG2336: Growth regulator [Escherichia coli E110019], gi\|193071123\|re... gi\|85675602, gi\|... - gi\|89109569\|ref\|AP_003349.1\| antitoxin of the ChpA-ChpR toxin-antitoxin system [Escherichia coli str... gi\|82545082, gi\|... - gi\|82545082\|ref\|YP_409029.1\| antitoxin MazE [Shigella boydii Sb227], gi\|81246493\|gb\|ABB67201.1\| ChpR... gi\|82778165, gi\|... - gi\|82778165\|ref\|YP_404514.1\| antitoxin MazE [Shigella dysenteriae Sd197], gi\|81242313\|gb\|ABB63023.1\|... gi\|194439652, gi... - gi\|83584961\|ref\|ZP_00923617.1\| COG2336: Growth regulator [Escherichia coli 101-1], gi\|194439652\|ref\|... gi\|194426298, gi... - gi\|75212597\|ref\|ZP_00712621.1\| COG2336: Growth regulator [Escherichia coli B171], gi\|194426298\|ref\|Z... gi\|157067917, gi... - gi\|75196754\|ref\|ZP_00706824.1\| COG2336: Growth regulator [Escherichia coli HS], gi\|157162237\|ref\|YP_... gi\|157080568, gi... - gi\|75187511\|ref\|ZP_00700778.1\| COG2336: Growth regulator [Escherichia coli E24377A], gi\|157158538\|re... EG10571 - antitoxin of the ChpA-ChpR toxin-antitoxin system / MazE antitoxin, toxin is MazF gi\|187428976, gi... - gi\|75176355\|ref\|ZP_00696499.1\| COG2336: Growth regulator [Shigella boydii BS512], gi\|187731984\|ref\|Y... gi\|208738299, gi... - gi\|208818176\|ref\|ZP_03258496.1\| pemI protein 1 [Escherichia coli O157:H7 str. EC4042], gi\|208738299\|... gi\|208814253, gi... - gi\|208814253\|ref\|ZP_03255582.1\| pemI protein 1 [Escherichia coli O157:H7 str. EC4045], gi\|208735530\|... gi\|209913491, gi... - gi\|209920232\|ref\|YP_002294316.1\| antitoxin MazE [Escherichia coli SE11], gi\|209913491\|dbj\|BAG78565.1... gi\|209400819, gi... - gi\|209400819\|ref\|YP_002272248.1\| pemI protein 1 [Escherichia coli O157:H7 str. EC4115], gi\|209162219... gi\|217326876, gi... - gi\|217326876\|ref\|ZP_03442959.1\| pemI protein 1 [Escherichia coli O157:H7 str. TW14588], gi\|217319243... gi\|237706589, gi... - gi\|237706589\|ref\|ZP_04537070.1\| pemI protein 1 [Escherichia sp. 3_2_53FAA], gi\|226899629\|gb\|EEH85888... gi\|215266172, gi... - gi\|215488100\|ref\|YP_002330531.1\| antitoxin MazE [Escherichia coli O127:H6 str. E2348/69], gi\|2152661... gi\|218362102, gi... - gi\|218555334\|ref\|YP_002388247.1\| antitoxin MazE [Escherichia coli IAI1], gi\|218362102\|emb\|CAQ99711.1... gi\|238901919, gi... - gi\|238901919\|ref\|YP_002927715.1\| antitoxin of the ChpA-ChpR toxin-antitoxin system [Escherichia coli... gi\|242378330, gi... - gi\|251786057\|ref\|YP_003000361.1\| hypothetical protein B21_02590 [Escherichia coli BL21], gi\|24237833... gi\|218355242, gi... - gi\|218547701\|ref\|YP_002381492.1\| antitoxin MazE [Escherichia fergusonii ATCC 35469], gi\|218355242\|em... gi\|254289468, gi... - gi\|254289468\|ref\|YP_003055216.1\| antitoxin of the ChpA-ChpR toxin-antitoxin system [Escherichia coli... gi\|189354709, gi... - gi\|189402609\|ref\|ZP_02783481.2\| pemI protein 1 [Escherichia coli O157:H7 str. EC4401], gi\|189354709\|... gi\|189009936, gi... - gi\|189009936\|ref\|ZP_02803778.2\| pemI protein 1 [Escherichia coli O157:H7 str. EC4076], gi\|189003255\|... gi\|254037833, gi... - gi\|254037833\|ref\|ZP_04871891.1\| MazE [Escherichia sp. 1_1_43], gi\|226839457\|gb\|EEH71478.1\| MazE [Esc... gi\|253974610, gi... - gi\|254162709\|ref\|YP_003045817.1\| antitoxin of the ChpA-ChpR toxin-antitoxin system [Escherichia coli... gi\|189404583, gi... - gi\|189404583\|ref\|ZP_02790469.2\| pemI protein 1 [Escherichia coli O157:H7 str. EC4501], gi\|189364849\|... gi\|189403164, gi... - gi\|189403164\|ref\|ZP_02793886.2\| pemI protein 1 [Escherichia coli O157:H7 str. EC4486], gi\|189362011\|... gi\|254794725, gi... - gi\|254794725\|ref\|YP_003079562.1\| antitoxin of the ChpA-ChpR toxin-antitoxin system [Escherichia coli... gi\|194434680, gi... - gi\|194434680\|ref\|ZP_03066934.1\| pemI protein 1 [Shigella dysenteriae 1012], gi\|194417077\|gb\|EDX33192... gi\|237871519 - gi\|237871519\|gb\|ACR26204.1\| MazE [Delivery vector PDGREF] gi\|189372220, gi... - gi\|189405071\|ref\|ZP_02813048.2\| pemI protein 1 [Escherichia coli O157:H7 str. EC869], gi\|189372220\|g... gi\|208729521, gi... - gi\|208809720\|ref\|ZP_03252057.1\| pemI protein 1 [Escherichia coli O157:H7 str. EC4206], gi\|208729521\|... gi\|195936385 - gi\|195936385\|ref\|ZP_03081767.1\| antitoxin MazE [Escherichia coli O157:H7 str. EC4024] gi\|218353114, gi... - gi\|218696382\|ref\|YP_002404049.1\| antitoxin MazE [Escherichia coli 55989], gi\|218353114\|emb\|CAU98941.... gi\|218559771, gi... - gi\|218559771\|ref\|YP_002392684.1\| antitoxin MazE [Escherichia coli S88], gi\|218366540\|emb\|CAR04293.1\|... gi\|91212150, gi\|... - gi\|91212150\|ref\|YP_542136.1\| antitoxin MazE [Escherichia coli UTI89], gi\|91073724\|gb\|ABE08605.1\| sup... gi\|86278330 - gi\|86278330\|gb\|ABC88415.1\| MazE [Delivery vector pDGIEF] gi\|170082355, gi... - gi\|170082355\|ref\|YP_001731675.1\| antitoxin of the ChpA-ChpR toxin-antitoxin system [Escherichia coli... gi\|94540632 - gi\|94540632\|gb\|ABF31011.1\| MazE [Delivery vector pIEFBPR] gi\|86278336 - gi\|86278336\|gb\|ABC88420.1\| MazE [Delivery vector pIEF16S] gi\|170018971, gi... - gi\|170018971\|ref\|YP_001723925.1\| antitoxin MazE [Escherichia coli ATCC 8739], gi\|169753899\|gb\|ACA765... gi\|13363114, gi\|... - gi\|15832897\|ref\|NP_311670.1\| antitoxin MazE [Escherichia coli O157:H7 str. Sakai], gi\|13363114\|dbj\|B... gi\|187766878, gi... - gi\|187776482\|ref\|ZP_02803024.2\| pemI protein 1 [Escherichia coli O157:H7 str. EC4196], gi\|187766878\|... gi\|110642924, gi... - gi\|110642924\|ref\|YP_670654.1\| antitoxin MazE [Escherichia coli 536], gi\|110344516\|gb\|ABG70753.1\| Maz... gi\|170520595, gi... - gi\|170682877\|ref\|YP_001744945.1\| pemI protein 1 [Escherichia coli SMS-3-5], gi\|170520595\|gb\|ACB18773... gi\|124498169, gi... - gi\|124532106\|ref\|ZP_01702105.1\| transcriptional regulator/antitoxin, MazE [Escherichia coli B], gi\|1... MAZE_ECO57 - Antitoxin MazE OS=Escherichia coli O157:H7 GN=mazE PE=3 SV=1 EG10571 - antitoxin of the ChpA-ChpR toxin-antitoxin system / MazE antitoxin, toxin is MazF gi\|15803304, gi\|... - gi\|15803304\|ref\|NP_289337.1\| antitoxin MazE [Escherichia coli O157:H7 EDL933], gi\|12517255\|gb\|AAG578... CHPR_ECOLI - PemI-like protein 1 (Protein mazE) - Escherichia coli	3.0E-20	[1..80]	[2..82]
gi\|24195433, gi\|... - gi\|24214480\|ref\|NP_711961.1\| ppGpp-regulated growth inhibitor suppressor ChpR/ MazE [Leptospira inte...	3.0E-19	[1..80]	[1..78]
gi\|25494842 - pir\|\|H84114 suppressor of ppGpp-regulated growth inhibitor (ChpA/MazF) BH3720 [imported] - Bacillus ... gi\|15616282, gi\|... - gi\|15616282\|ref\|NP_244587.1\| suppressor of ppGpp-regulated growth inhibitor (ChpA/MazF) [Bacillus ha...	1.0E-18	[1..78]	[3..79]
gi\|2688952 - gi\|2688952\|gb\|AAC82515.1\| PemI [IncL/M plasmid R446b]	1.0E-18	[2..79]	[15..96]
gi\|69209776 - gi\|69209776\|gb\|AAZ03779.1\| PemI [Klebsiella pneumoniae]	2.0E-18	[2..79]	[15..96]
gi\|31790970, gi\|... - gi\|31790970\|ref\|NP_857607.1\| PemI-like protein [Pediococcus acidilactici], gi\|31442758\|gb\|AAP55635.1...	2.0E-18	[2..80]	[34..114]
gi\|35210655, gi\|... - gi\|37519664\|ref\|NP_923041.1\| cell growth regulatory protein [Gloeobacter violaceus PCC 7421], gi\|352...	2.0E-18	[1..80]	[1..79]

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Predicted Domain #1

Region A:
Residues: [1-80]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSQIQKWGN SLALRIPKAL AQQVGLTQSS EVELLLQDGQ IVIRPVPARQ YDLAALLAEM  60
   61 TPENLHGETD WGALEGREEW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.09691
Match:	1ub4C
Description:	MazE
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits