YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7473815
Organism:	Deinococcus radiodurans
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7473815.

Description	E-value	Query Range	Subject Range
gi\|5712722 - gi\|5712722\|gb\|AAD47625.1\| unknown [Pseudomonas sp. BG33R]	223.0	[0..3]	[168..28]
gi\|71735895, gi\|... - gi\|71735895\|ref\|YP_273005.1\| ribosomal protein L21 [Pseudomonas syringae pv. phaseolicola 1448A], gi...	183.0	[0..25]	[168..1]
gi\|26987424, gi\|... - gi\|26987424\|ref\|NP_742849.1\| 50S ribosomal protein L21 [Pseudomonas putida KT2440], gi\|24982083\|gb\|A...	174.0	[0..32]	[168..29]
mRpL21-PA, FBpp0... - The gene mitochondrial ribosomal protein L21 is referred to in FlyBase by the symbol Dmel\mRpL21 (CG...	157.0	[0..7]	[168..3]
gi\|110646424, gi... - gi\|110833313\|ref\|YP_692172.1\| 50S ribosomal protein L21 [Alcanivorax borkumensis SK2], gi\|110646424\|...	149.0	[0..65]	[169..4]
gi\|78220139, gi\|... - gi\|78357734\|ref\|YP_389183.1\| 50S ribosomal protein L21P [Desulfovibrio desulfuricans subsp. desulfur...	149.0	[0..69]	[167..47]
gi\|25525493 - pir\|\|AD3277 LSU ribosomal protein L21P [imported] - Brucella melitensis (strain 16M) gi\|17982086, gi\|... - gi\|17986485\|ref\|NP_539119.1\| LSU ribosomal protein L21P [Brucella melitensis 16M], gi\|17982086\|gb\|AA...	146.0	[0..45]	[167..12]
RL21_BACSK - 50S ribosomal protein L21 OS=Bacillus clausii (strain KSM-K16) GN=rplU PE=3 SV=1	145.0	[0..70]	[169..1]
RL21_BACHD - 50S ribosomal protein L21 OS=Bacillus halodurans GN=rplU PE=3 SV=1 RL21_BACHD - 50S ribosomal protein L21 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ...	145.0	[0..70]	[167..1]
RL21_DESVH - 50S ribosomal protein L21 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)... RL21_DESVV - 50S ribosomal protein L21 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplU PE=3 SV=1 gi\|241879294, gi... - gi\|241908289\|ref\|ZP_04792859.1\| ribosomal protein L21 [Desulfovibrio vulgaris RCH1], gi\|241879294\|gb...	144.0	[0..70]	[167..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHAVHFLFAP TWGQDCLLLP VPVKLPVRAC SRGQVGVVQF SLGGPATGKR QHNGPSLLAM  60
   61 KGAGGRRKE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [70-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAIIQTGGK QYRVSEGDVI RVESLQGEAG DKVELKALFV GGEQTVFGED AGKYTVQAEV  60
   61 VEHGRGKKIY IRKYKSGVQY RRRTGHRQNF TAIKILGIQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	1nkwP
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits