YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|6457752, gi\|1...
Organism:	Deinococcus radiodurans R1
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|6457752, gi|1....

Description	E-value	Query Range	Subject Range
gi\|5712722 - gi\|5712722\|gb\|AAD47625.1\| unknown [Pseudomonas sp. BG33R]	223.0	[0..3]	[168..28]
gi\|71735895, gi\|... - gi\|71735895\|ref\|YP_273005.1\| ribosomal protein L21 [Pseudomonas syringae pv. phaseolicola 1448A], gi...	183.0	[0..25]	[168..1]
gi\|26987424, gi\|... - gi\|26987424\|ref\|NP_742849.1\| 50S ribosomal protein L21 [Pseudomonas putida KT2440], gi\|24982083\|gb\|A...	174.0	[0..32]	[168..29]
mRpL21-PA, FBpp0... - The gene mitochondrial ribosomal protein L21 is referred to in FlyBase by the symbol Dmel\mRpL21 (CG...	157.0	[0..7]	[168..3]
gi\|110646424, gi... - gi\|110833313\|ref\|YP_692172.1\| 50S ribosomal protein L21 [Alcanivorax borkumensis SK2], gi\|110646424\|...	149.0	[0..65]	[169..4]
gi\|78220139, gi\|... - gi\|78357734\|ref\|YP_389183.1\| 50S ribosomal protein L21P [Desulfovibrio desulfuricans subsp. desulfur...	149.0	[0..69]	[167..47]
gi\|25525493 - pir\|\|AD3277 LSU ribosomal protein L21P [imported] - Brucella melitensis (strain 16M) gi\|17982086, gi\|... - gi\|17986485\|ref\|NP_539119.1\| LSU ribosomal protein L21P [Brucella melitensis 16M], gi\|17982086\|gb\|AA...	146.0	[0..45]	[167..12]
RL21_BACSK - 50S ribosomal protein L21 OS=Bacillus clausii (strain KSM-K16) GN=rplU PE=3 SV=1	145.0	[0..70]	[169..1]
RL21_BACHD - 50S ribosomal protein L21 OS=Bacillus halodurans GN=rplU PE=3 SV=1 RL21_BACHD - 50S ribosomal protein L21 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ...	145.0	[0..70]	[167..1]
RL21_DESVH - 50S ribosomal protein L21 OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)... RL21_DESVV - 50S ribosomal protein L21 OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=rplU PE=3 SV=1 gi\|241879294, gi... - gi\|241908289\|ref\|ZP_04792859.1\| ribosomal protein L21 [Desulfovibrio vulgaris RCH1], gi\|241879294\|gb...	144.0	[0..70]	[167..1]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHAVHFLFAP TWGQDCLLLP VPVKLPVRAC SRGQVGVVQF SLGGPATGKR QHNGPSLLAM  60
   61 KGAGGRRKE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.602	N/A	N/A	d.15.7	Immunoglobulin-binding domains
View	Download	0.580	N/A	N/A	d.15.7	Immunoglobulin-binding domains
View	Download	0.442	N/A	N/A	d.52.10	Description not found.
View	Download	0.406	N/A	N/A	d.15.7	Immunoglobulin-binding domains
View	Download	0.395	N/A	N/A	d.74.2	C-terminal domain of arginine repressor
View	Download	0.389	N/A	N/A	d.52.9	Description not found.
View	Download	0.384	N/A	N/A	d.52.10	Description not found.
View	Download	0.366	N/A	N/A	d.68.5	C-terminal domain of ProRS
View	Download	0.256	N/A	N/A	g.18.1	Complement control module/SCR domain

Predicted Domain #2

Region A:
Residues: [70-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAIIQTGGK QYRVSEGDVI RVESLQGEAG DKVELKALFV GGEQTVFGED AGKYTVQAEV  60
   61 VEHGRGKKIY IRKYKSGVQY RRRTGHRQNF TAIKILGIQG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.221849
Match:	1nkwP
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits