YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11276540
Organism:	Neisseria meningitidis
Length:	122 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11276540.

Description	E-value	Query Range	Subject Range
gi\|33566505 - gi\|33566505\|emb\|CAE37761.1\| 30s ribosomal protein s6 [Bordetella parapertussis] gi\|33597054 - gi\|33597054\|ref\|NP_884697.1\| 30S ribosomal protein S6 [Bordetella parapertussis 12822] gi\|33568499, gi\|... - gi\|33600899\|ref\|NP_888459.1\| 30S ribosomal protein S6 [Bordetella bronchiseptica RB50], gi\|33568499\|...	162.0	[0..1]	[108..32]
gi\|239999183 - gi\|239999183\|ref\|ZP_04719107.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae 35/02] gi\|240118216 - gi\|240118216\|ref\|ZP_04732278.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae PID1] RS6_NEIG1 - 30S ribosomal protein S6 OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=rpsF PE=3 SV=1 gi\|240123764 - gi\|240123764\|ref\|ZP_04736720.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae PID332] gi\|240016351 - gi\|240016351\|ref\|ZP_04722891.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae FA6140] gi\|240115918 - gi\|240115918\|ref\|ZP_04729980.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae PID18] gi\|240125955 - gi\|240125955\|ref\|ZP_04738841.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae SK-92-679] RS6_NEIGO - 30S ribosomal protein S6 OS=Neisseria gonorrhoeae GN=rpsF PE=3 SV=1 gi\|254493954, gi... - gi\|254493954\|ref\|ZP_05107125.1\| 30S ribosomal protein S6 [Neisseria gonorrhoeae 1291], gi\|226512994\|...	162.0	[0..1]	[122..1]
RS6_THIDA - 30S ribosomal protein S6 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rpsF PE=3 SV=1	160.0	[0..1]	[122..1]
RS6_DECAR - 30S ribosomal protein S6 OS=Dechloromonas aromatica (strain RCB) GN=rpsF PE=3 SV=1	160.0	[0..1]	[115..1]
RS6_CHRSD - 30S ribosomal protein S6 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 1376...	159.0	[0..1]	[120..1]
RS6_BURXL - 30S ribosomal protein S6 OS=Burkholderia xenovorans (strain LB400) GN=rpsF PE=3 SV=1 RS6_BURPP - 30S ribosomal protein S6 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpsF PE=3 SV=1 gi\|170692292, gi... - gi\|170692292\|ref\|ZP_02883455.1\| ribosomal protein S6 [Burkholderia graminis C4D1M], gi\|170142722\|gb\|...	159.0	[0..1]	[121..1]
RS6_NEIMB - 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup B GN=rpsF PE=3 SV=1 gi\|11276542 - pir\|\|B81097 30S ribosomal protein S6 NMB1323 [imported] - Neisseria meningitidis (strain MC58 serogr... RS6_NEIMB - 30S ribosomal protein S6 OS=Neisseria meningitidis serogroup B (strain MC58) GN=rpsF PE=3 SV=1	159.0	[0..1]	[122..1]
gi\|90414464, gi\|... - gi\|90414464\|ref\|ZP_01222440.1\| 30S ribosomal protein S6 [Photobacterium profundum 3TCK], gi\|90324469...	157.0	[0..1]	[120..1]
RS6_PHOPR - 30S ribosomal protein S6 OS=Photobacterium profundum GN=rpsF PE=3 SV=1 RS6_PHOPR - 30S ribosomal protein S6 OS=Photobacterium profundum (strain SS9) GN=rpsF PE=3 SV=1	157.0	[0..1]	[120..1]
RS6_METFK - 30S ribosomal protein S6 OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=rpsF ...	157.0	[0..1]	[110..1]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRHYEIVFIV HPDQSEQVPA MVERYKTMIA EANGKIHRLE DWGRRQLAYP INKIHKAHYV  60
   61 LMNIETTPEV VEELETAFRF NDAVLRHLTI KTKHAVTEAS PMLGGEKAKN LLSGASEEAV 120
  121 AQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.522879
Match:	1p6gF
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	3.76170790689216	bayes_pls_golite062009
structural molecule activity	3.47672166437086	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: