YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15674258, gi\|...
Organism:	Streptococcus pyogenes M1 GAS
Length:	123 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15674258, gi|....

Description	E-value	Query Range	Subject Range
gi\|23094436, gi\|... - gi\|25010085\|ref\|NP_734480.1\| hypothetical protein gbs0010 [Streptococcus agalactiae NEM316], gi\|2309... gi\|76563611, gi\|... - gi\|76788554\|ref\|YP_328737.1\| hypothetical protein SAK_0010 [Streptococcus agalactiae A909], gi\|76563... gi\|77159479, gi\|... - gi\|77414469\|ref\|ZP_00790619.1\| putative cell division protein DivIC [Streptococcus agalactiae 515], ... gi\|77162657, gi\|... - gi\|77411321\|ref\|ZP_00787670.1\| cell division protein DivIC, putative [Streptococcus agalactiae CJB11... gi\|77173698, gi\|... - gi\|77407699\|ref\|ZP_00784454.1\| cell division protein DivIC, putative [Streptococcus agalactiae COH1]... gi\|77175762, gi\|... - gi\|77405618\|ref\|ZP_00782707.1\| cell division protein DivIC, putative [Streptococcus agalactiae H36B]... gi\|22536196, gi\|... - gi\|22536196\|ref\|NP_687047.1\| hypothetical protein SAG0011 [Streptococcus agalactiae 2603V/R], gi\|225... gi\|76586658, gi\|... - gi\|76797978\|ref\|ZP_00780237.1\| conserved hypothetical protein [Streptococcus agalactiae 18RS21], gi\|...	102.0	[0..1]	[123..1]

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Predicted Domain #1

Region A:
Residues: [1-123]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKPSIVQLN NHYIKKENLK KKFEEEESQK RNRFMGWILV SMMFLFILPT YNLVKSYVDF  60
   61 EKQNQQVVKL KKEYNELSES TKKEKQLAER LKDDNFVKKY ARAKYYLSRE GEMIYPIPGL 120
  121 LPK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	21.657577
Match:	PF04977.6
Description:	No description for PF04977.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits