YRC Public Data Repository - Protein Structure Prediction

Protein:	Y989_METJA
Organism:	Methanocaldococcus jannaschii DSM 2661
Length:	114 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y989_METJA.

Description	E-value	Query Range	Subject Range
Y008_METKA - Uncharacterized protein MK0008 OS=Methanopyrus kandleri (strain AV19 / DSM 6324 / JCM 9639 / NBRC 10... Y008_METKA - Uncharacterized protein MK0008 OS=Methanopyrus kandleri GN=MK0008 PE=4 SV=1	131.0	[0..3]	[114..10]
gi\|78700533, gi\|... - gi\|78700533\|ref\|ZP_00864989.1\| DsrE protein [Alkalilimnicola ehrlichei MLHE-1], gi\|78522020\|gb\|EAP35...	131.0	[0..1]	[114..1]
gi\|74057996, gi\|... - gi\|74318501\|ref\|YP_316241.1\| DsrE protein [Thiobacillus denitrificans ATCC 25259], gi\|74057996\|gb\|AA...	127.0	[0..1]	[114..1]
gi\|88928617, gi\|... - gi\|88948727\|ref\|ZP_01151490.1\| DsrE protein [Halorhodospira halophila SL1], gi\|88928617\|gb\|EAR47578....	127.0	[0..1]	[114..1]
gi\|82947309, gi\|... - gi\|83312468\|ref\|YP_422732.1\| intracellular sulfur oxidation protein dsrE [Magnetospirillum magneticu...	125.0	[0..1]	[114..1]
gi\|23013192 - gi\|23013192\|ref\|ZP_00053121.1\| COG1553: Uncharacterized conserved protein involved in intracellular ...	125.0	[0..1]	[114..1]
gi\|194332886, gi... - gi\|68553312\|ref\|ZP_00592689.1\| DsrE-like protein [Prosthecochloris aestuarii DSM 271], gi\|68239764\|g...	124.0	[0..1]	[114..1]
gi\|189346232, gi... - gi\|67919701\|ref\|ZP_00513268.1\| DsrE-like protein [Chlorobium limicola DSM 245], gi\|67782669\|gb\|EAM42...	123.0	[0..1]	[114..1]
gi\|45047432, gi\|... - gi\|45357872\|ref\|NP_987429.1\| DsrE family protein [Methanococcus maripaludis S2], gi\|45047432\|emb\|CAF...	122.0	[0..1]	[114..1]
gi\|78189905, gi\|... - gi\|78189905\|ref\|YP_380243.1\| DsrE protein [Chlorobium chlorochromatii CaD3], gi\|78172104\|gb\|ABB29200...	120.0	[0..1]	[114..1]

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Predicted Domain #1

Region A:
Residues: [1-114]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFTVIITEA PYGKERAYSA LRFALTALLE GIEVNIFLLE NGVYVAKKEQ NPSEVPNYLE  60
   61 LLKNAIELGA VVKVCGPCCK ARGLKEEDLI EGAKLATMHD LIAFVKESDN VVTF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.30103
Match:	1jx7A
Description:	Hypothetical protein YchN
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits