YRC Public Data Repository - Protein Structure Prediction

Protein:	AGL31_ARATH
Organism:	Arabidopsis thaliana
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGL31_ARATH.

Description	E-value	Query Range	Subject Range
gi\|60265528 - gi\|60265528\|gb\|AAX15922.1\| AGL2 [Acorus americanus]	197.0	[0..1]	[192..1]
gi\|33309873 - gi\|33309873\|gb\|AAQ03224.1\|AF411843_1 MADS box transcription factor [Elaeis guineensis]	196.0	[0..1]	[193..1]
gi\|6651033 - gi\|6651033\|gb\|AAF22138.1\|AF129875_1 MADS box transcription factor MADS1 [Capsicum annuum]	194.0	[0..1]	[196..1]
gi\|34979582 - gi\|34979582\|gb\|AAQ83835.1\| MADS box protein [Asparagus officinalis]	193.0	[0..1]	[196..1]
gi\|5019460 - gi\|5019460\|emb\|CAB44457.1\| putative MADS domain transcription factor GGM11 [Gnetum gnemon]	193.0	[0..1]	[183..1]
gi\|74053671 - gi\|74053671\|gb\|AAZ95252.1\| MADS box protein SEP1 [Dendrobium crumenatum]	192.0	[0..1]	[192..1]
gi\|60265532 - gi\|60265532\|gb\|AAX15924.1\| AGL9.2 [Persea americana]	192.0	[0..1]	[192..1]
gi\|33342042 - gi\|33342042\|dbj\|BAC80255.1\| MADS-box transcription factor [Houttuynia cordata]	192.0	[0..1]	[192..1]

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Predicted Domain #1

Region A:
Residues: [1-78]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRKKVEIKR IENKSSRQVT FSKRRNGLIE KARQLSILCE SSIAVLVVSG SGKLYKSASG  60
   61 DNMSKIIDRY EIHHADEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.39794
Match:	1tqeP
Description:	Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [79-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EALDLAEKTR NYLPLKELLE IVQSKLEESN VDNASVDTLI SLEEQLETAL SVTRARKTEL  60
   61 MMGEVKSLQK TENLLREENQ TLASQVGKKT FLVIEGDRGM SWENGSGNKV RETLPLLK

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits