YRC Public Data Repository - Protein Structure Prediction

Protein:	UBID_PSEAB
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	488 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBID_PSEAB.

Description	E-value	Query Range	Subject Range
UBID_PSEHT - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=u...	0.0	[1..487]	[1..487]
gi\|88816737, gi\|... - gi\|88861256\|ref\|ZP_01135888.1\| 3-octaprenyl-4-hydroxybenzoate carboxylyase [Pseudoalteromonas tunica...	0.0	[1..487]	[1..487]
gi\|86164395, gi\|... - gi\|87120292\|ref\|ZP_01076187.1\| 3-octaprenyl-4-hydroxybenzoate carboxylyase; ubiquinone biosynthesis,...	0.0	[1..488]	[7..494]
gi\|77973701 - gi\|77973701\|ref\|ZP_00829247.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	0.0	[1..487]	[12..498]
gi\|238798046, gi... - gi\|77961736\|ref\|ZP_00825567.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	0.0	[1..487]	[12..498]
gi\|229700330, gi... - gi\|229896687\|ref\|ZP_04511853.1\| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase [Yersinia pestis Pestoi... gi\|229900017, gi... - gi\|229900017\|ref\|ZP_04515154.1\| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase [Yersinia pestis biovar... UBID_YERPA - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=ubiD... UBID_YERPN - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=ubi... gi\|165921849, gi... - gi\|165926325\|ref\|ZP_02222157.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Yersinia pestis biovar... gi\|167398700, gi... - gi\|167398700\|ref\|ZP_02304224.1\| 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Yersinia pestis biovar... gi\|167468669 - gi\|167468669\|ref\|ZP_02333373.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Yersinia pestis FV-1] UBID_YERPE - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Yersinia pestis GN=ubiD PE=3 SV=1 gi\|161484893 - gi\|161484893\|ref\|NP_667799.2\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Yersinia pestis KIM] gi\|16123905, gi\|... - gi\|218930773\|ref\|YP_002348648.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Yersinia pestis CO92]... gi\|161511318 - gi\|161511318\|ref\|NP_994569.2\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Yersinia pestis biovar M... gi\|153997172, gi... - gi\|153997172\|ref\|ZP_02022305.1\| hypothetical protein YPE_3627 [Yersinia pestis CA88-4125], gi\|149289... gi\|229695819, gi... - gi\|229839453\|ref\|ZP_04459612.1\| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase [Yersinia pestis biovar...	0.0	[1..487]	[4..490]
UBID_ALCBS - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11...	0.0	[1..488]	[1..488]
UBID_YERPS - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Yersinia pseudotuberculosis GN=ubiD PE=3 SV=1 UBID_YERPS - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase OS=Yersinia pseudotuberculosis serotype I (strain IP329... gi\|153948611, gi... - gi\|153948611\|ref\|YP_001399277.1\| 3-octaprenyl-4-hydroxybenzoate decarboxylase [Yersinia pseudotuberc...	0.0	[1..487]	[4..490]
gi\|77978471 - gi\|77978471\|ref\|ZP_00833899.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	0.0	[1..487]	[12..498]
gi\|77956566 - gi\|77956566\|ref\|ZP_00820656.1\| COG0043: 3-polyprenyl-4-hydroxybenzoate decarboxylase and related dec...	0.0	[1..487]	[12..498]

Back

Predicted Domain #1

Region A:
Residues: [1-488]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTFKDLRDFI AQLEQRGALK RIQVPISPVL EMTEVCDRTL RAKGPALLFE KPTGFDMPVL  60
   61 GNLFGTPERV ALGMGAEDVG ALREIGKLLA QLKEPEPPKG LKDAWAKLPM YRKVLSMAPK 120
  121 VLKDAPCQEV VEEGEDVDLG RLPVQTCWPG DVGPLITWGL TVTRGPNKER QNLGIYRQQV 180
  181 IGRNKVIMRW LSHRGGALDY REWCQKHPGQ PYPVAVALGA DPATILGAVT PVPDTLSEYA 240
  241 FAGLLRGHRT ELVKCRGSDL QVPASAEIVL EGVIHPGEMA DEGPYGDHTG YYNEVDRFPV 300
  301 FTVERVTRRQ KPIYHSTYTG RPPDEPAILG VALNEVFVPI LQKQFPEIVD FYLPPEGCSY 360
  361 RMAVVTMKKQ YPGHAKRVML GVWSFLRQFM YTKFVIVTDD DIDARDWNDV IWAITTRMDP 420
  421 KRDTVMIDNT PIDYLDFASP VSGLGSKMGL DATHKWPGET SREWGRAIVK DEAVTRRIDA 480
  481 LWSSLGID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2idbA
Description:	No description for 2idbA was found.

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	0.806130882178534	bayes_pls_golite062009
catalytic activity	0.660906721832294	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: