YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11351116
Organism:	Pseudomonas aeruginosa
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11351116.

Description	E-value	Query Range	Subject Range
gi\|94415452, gi\|... - gi\|94415452\|ref\|ZP_01295293.1\| hypothetical protein PaerP_01002820 [Pseudomonas aeruginosa PA7], gi\|...	2.0E-69	[1..299]	[1..299]
gi\|49084568 - gi\|49084568\|gb\|AAT51210.1\| PA1342 [synthetic construct]	2.0E-66	[6..299]	[7..300]
gi\|254234461, gi... - gi\|84321901\|ref\|ZP_00970253.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|11351104 - pir\|\|H83478 probable binding protein component of ABC transporter PA1342 [imported] - Pseudomonas ae... gi\|84328278, gi\|... - gi\|84328278\|ref\|ZP_00976285.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|9947282, gi\|1... - gi\|9947282\|gb\|AAG04731.1\|AE004563_8 probable binding protein component of ABC transporter [Pseudomon... gi\|218892553, gi... - gi\|218892553\|ref\|YP_002441422.1\| putative binding protein component of ABC transporter [Pseudomonas ...	3.0E-66	[6..299]	[7..300]
gi\|218894181, gi... - gi\|218894181\|ref\|YP_002443050.1\| putative binding protein component of ABC transporter [Pseudomonas ... gi\|194549196, gi... - gi\|84317671\|ref\|ZP_00966109.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	3.0E-66	[1..299]	[1..299]
gi\|107100793 - gi\|107100793\|ref\|ZP_01364711.1\| hypothetical protein PaerPA_01001821 [Pseudomonas aeruginosa PACS2] gi\|115584515, gi... - gi\|53727643\|ref\|ZP_00138969.2\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	5.0E-66	[6..299]	[7..300]
gi\|194555022, gi... - gi\|84323831\|ref\|ZP_00971898.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p... gi\|107104181 - gi\|107104181\|ref\|ZP_01368099.1\| hypothetical protein PaerPA_01005254 [Pseudomonas aeruginosa PACS2]	7.0E-66	[1..299]	[1..299]
gi\|71735103, gi\|... - gi\|71735103\|ref\|YP_276039.1\| amino acid ABC transporter, periplasmic amino acid-binding protein [Pse...	2.0E-64	[6..299]	[61..354]
gi\|84360756 - gi\|84360756\|ref\|ZP_00985448.1\| COG0834: ABC-type amino acid transport/signal transduction systems, p...	3.0E-64	[1..297]	[1..295]
gi\|73540163, gi\|... - gi\|73540163\|ref\|YP_294683.1\| extracellular solute-binding protein [Ralstonia eutropha JMP134], gi\|72...	3.0E-64	[1..297]	[1..297]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTLVSSTFA LSLSLAIGAA QAEELSGTLK KVADNGTITL GYRDASVPFS YLGDNSGQPM  60
   61 GYSVELAGKV VERLKSTLGK PELKVKYNLV TSQTRIPLVQ NGTVDLECGS TGVTAERQKQ 120
  121 VAFSYGFIYV KGQLLTRKDS GIAHFDDLKG KNVVTTAGTT NERYLKNYNA EHKLGMNVVS 180
  181 AKDHGEAFQM LQSGRAVAFY MDDALLYGER AKARQPHDWV VVGEPQSREI YSCMVRKDDP 240
  241 QFLALVNETL AGLYRSGEIQ GIYQRWFQQP IPPKGLNLEF PMTAELKAIL ENPTSDPVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.0
Match:	2ia4A
Description:	No description for 2ia4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits