YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11352718
Organism:	Pseudomonas aeruginosa
Length:	267 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11352718.

Description	E-value	Query Range	Subject Range
gi\|194549208, gi... - gi\|84317683\|ref\|ZP_00966121.1\| COG0805: Sec-independent protein secretion pathway component TatC [Ps... gi\|194555033, gi... - gi\|84323844\|ref\|ZP_00971911.1\| COG0805: Sec-independent protein secretion pathway component TatC [Ps... gi\|107104169 - gi\|107104169\|ref\|ZP_01368087.1\| hypothetical protein PaerPA_01005242 [Pseudomonas aeruginosa PACS2] gi\|218894169, gi... - gi\|218894169\|ref\|YP_002443038.1\| transport protein TatC [Pseudomonas aeruginosa LESB58], gi\|21877439... gi\|32044444, gi\|... - gi\|32044444\|ref\|ZP_00141545.1\| COG0805: Sec-independent protein secretion pathway component TatC [Ps...	4.0E-78	[1..267]	[1..267]
gi\|152988364, gi... - gi\|94415440\|ref\|ZP_01295281.1\| hypothetical protein PaerP_01002808 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-77	[1..267]	[1..267]
gi\|66043649, gi\|... - gi\|66043649\|ref\|YP_233490.1\| Sec-independent periplasmic protein translocase [Pseudomonas syringae p...	3.0E-74	[7..265]	[4..264]
gi\|71558730, gi\|... - gi\|71738177\|ref\|YP_272668.1\| Sec-independent protein translocase TatC [Pseudomonas syringae pv. phas...	3.0E-74	[7..265]	[4..264]
tr\|Q87UY5\|Q87UY5... - Sec-independent protein translocase protein TatC OS=Pseudomonas syringae pv. tomato (strain DC3000) ... gi\|28872269, gi\|... - gi\|28872269\|ref\|NP_794888.1\| sec-independent protein translocase TatC [Pseudomonas syringae pv. toma... gi\|213925788, gi... - gi\|213969417\|ref\|ZP_03397554.1\| sec-independent protein translocase TatC [Pseudomonas syringae pv. t...	2.0E-73	[7..265]	[4..264]
gi\|104783998, gi... - gi\|95112985\|emb\|CAK17713.1\| twin aqrginine translocase protein subunit C [Pseudomonas entomophila L4... gi\|95112985 - gi\|95112985\|emb\|CAK17713.1\| twin aqrginine translocase protein subunit C [Pseudomonas]	9.0E-73	[7..266]	[3..262]
gi\|73354816 - gi\|73354816\|gb\|AAZ75670.1\| TatC [Pseudomonas syringae pv. maculicola]	1.0E-72	[7..265]	[4..264]
gi\|62182443, gi\|... - gi\|62182443\|ref\|YP_218860.1\| TatABCE protein translocation system subunit [Salmonella enterica subsp... gi\|56130086, gi\|... - gi\|56415829\|ref\|YP_152904.1\| twin-arginine protein translocation system subunit TatC [Salmonella ent... gi\|161617098, gi... - gi\|161617098\|ref\|YP_001591063.1\| TatABCE protein translocation system subunit [Salmonella enterica s... lcl\|NC_016856.1_... - [gene=tatC] [protein=TatABCE protein translocation system subunit] [protein_id=YP_005240240.1] [loca... gi\|197263971, gi... - gi\|197263971\|ref\|ZP_03164045.1\| twin arginine-targeting protein translocase TatC [Salmonella enteric... gi\|197364759, gi... - gi\|197364759\|ref\|YP_002144396.1\| twin-arginine protein translocation system subunit TatC [Salmonella... gi\|198242971, gi... - gi\|198242971\|ref\|YP_002217902.1\| twin arginine-targeting protein translocase TatC [Salmonella enteri... gi\|200387906, gi... - gi\|200387906\|ref\|ZP_03214518.1\| twin arginine-targeting protein translocase TatC [Salmonella enteric... gi\|194407643, gi... - gi\|194449339\|ref\|YP_002047985.1\| twin-arginine protein translocation system subunit TatC [Salmonella... gi\|194454848, gi... - gi\|194468484\|ref\|ZP_03074468.1\| twin arginine-targeting protein translocase TatC [Salmonella enteric... gi\|194736563, gi... - gi\|194736563\|ref\|YP_002116901.1\| twin arginine-targeting protein translocase TatC [Salmonella enteri... gi\|197248767, gi... - gi\|197248767\|ref\|YP_002148901.1\| twin arginine-targeting protein translocase TatC [Salmonella enteri... gi\|205336498, gi... - gi\|205336498\|gb\|EDZ23262.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|205348280, gi... - gi\|205348280\|gb\|EDZ34911.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|205340966, gi... - gi\|205340966\|gb\|EDZ27730.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|194446122, gi... - gi\|194446122\|ref\|YP_002043204.1\| twin arginine-targeting protein translocase TatC [Salmonella enteri... gi\|167553389, gi... - gi\|205322162\|gb\|EDZ10001.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|167993915, gi... - gi\|205328134\|gb\|EDZ14898.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|168233910, gi... - gi\|205332097\|gb\|EDZ18861.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|168238428, gi... - gi\|197288761\|gb\|EDY28136.1\| twin arginine-targeting protein translocase TatC [Salmonella enterica su... gi\|213614464 - gi\|213614464\|ref\|ZP_03371290.1\| twin-arginine protein translocation system subunit TatC [Salmonella ... gi\|16504462, gi\|... - gi\|25312120\|pir\|\|AG0915 sec-independent protein translocase protein [imported] - Salmonella enterica... gi\|213854778 - gi\|213854778\|ref\|ZP_03383018.1\| twin-arginine protein translocation system subunit TatC [Salmonella ... gi\|214002448 - gi\|214002448\|ref\|ZP_03413183.1\| twin-arginine protein translocation system subunit TatC [Salmonella ... gi\|224585790, gi... - gi\|224585790\|ref\|YP_002639589.1\| sec-independent protein translocase protein [Salmonella enterica su... gi\|16762159 - gi\|16762159\|ref\|NP_457776.1\| TatABCE protein translocation system subunit [Salmonella enterica subsp... gi\|204320701, gi... - gi\|204930297\|ref\|ZP_03221274.1\| twin arginine-targeting protein translocase TatC [Salmonella enteric... gi\|205274247, gi... - gi\|205354466\|ref\|YP_002228267.1\| twin-arginine protein translocation system subunit TatC [Salmonella... gi\|6960228, gi\|1... - gi\|6960228\|gb\|AAF33418.1\| 90% identity to E. coli SEC-independent protein translocase protein (TATC)... gi\|206710978, gi... - gi\|207859175\|ref\|YP_002245826.1\| twin-arginine protein translocation system subunit TatC [Salmonella... gi\|29143648, gi\|... - gi\|29143648\|ref\|NP_806990.1\| TatABCE protein translocation system subunit [Salmonella enterica subsp... gi\|213583369 - gi\|213583369\|ref\|ZP_03365195.1\| twin-arginine protein translocation system subunit TatC [Salmonella ...	3.0E-72	[12..267]	[4..259]
gi\|77456608, gi\|... - gi\|77456608\|ref\|YP_346113.1\| Sec-independent periplasmic protein translocase [Pseudomonas fluorescen...	1.0E-71	[9..266]	[7..263]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSADKPEQPE HDQEMPLVSH LTELRTRLLR SVAAIFLIFA GLFYFSQKIY TLVSEPLRRF  60
   61 LPEG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [65-150]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSMIATDVAS PFLAPFKLTM VVALFLAMPV ILAQVWGFIA PGLYKHEKRV ALPLLVSSII  60
   61 LFYAGMAFAY FLVFPMIFHF FASVTP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [151-267]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EGVAMMTDIN SYLDFVLTLF FAFGVAFEIP VATVLLIWIG VVDVDYLKKI RPYVIIGCFV  60
   61 VGMVLTPPDI FSQTMLAVPM WLLFEIGLLF GRLVRKRGEH PDDQPASDGD QPPATRQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits