YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|53726581, gi\|...
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	477 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|53726581, gi|....

Description	E-value	Query Range	Subject Range
gi\|89951927, gi\|... - gi\|90022327\|ref\|YP_528154.1\| glutamate synthase subunit beta [Saccharophagus degradans 2-40], gi\|899...	0.0	[2..477]	[8..483]
gi\|94415406, gi\|... - gi\|94415406\|ref\|ZP_01295247.1\| hypothetical protein PaerP_01002774 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..477]	[1..477]
gi\|83636648, gi\|... - gi\|83648605\|ref\|YP_437040.1\| glutamate synthase subunit beta [Hahella chejuensis KCTC 2396], gi\|8363...	0.0	[6..477]	[1..472]
gi\|95108604, gi\|... - gi\|95108604\|emb\|CAK13298.1\| glutamate synthase [NADPH] small chain (GOGAT) [Pseudomonas entomophila ... gi\|95108604 - gi\|95108604\|emb\|CAK13298.1\| glutamate synthase [NADPH] small chain (GOGAT) [Pseudomonas entomophila ...	0.0	[6..477]	[1..472]
gi\|26991751, gi\|... - gi\|26991751\|ref\|NP_747176.1\| glutamate synthase subunit beta [Pseudomonas putida KT2440], gi\|2498685... gi\|82716770, gi\|... - gi\|82736127\|ref\|ZP_00898987.1\| Glutamate synthase, NADH/NADPH, small subunit 2 [Pseudomonas putida F... gi\|58615307 - gi\|58615307\|gb\|AAW80264.1\| GltD [Pseudomonas putida] tr\|E4RAK0\|E4RAK0... - GltD OS=Pseudomonas putida (strain BIRD-1) GN=gltD PE=4 SV=1 gi\|167036114, gi... - gi\|167036114\|ref\|YP_001671345.1\| glutamate synthase subunit beta [Pseudomonas putida GB-1], gi\|16686...	0.0	[6..477]	[1..472]
gi\|77380645, gi\|... - gi\|77456642\|ref\|YP_346147.1\| glutamate synthase subunit beta [Pseudomonas fluorescens Pf0-1], gi\|773...	0.0	[6..477]	[1..472]
gi\|68348257, gi\|... - gi\|70733958\|ref\|YP_257598.1\| glutamate synthase subunit beta [Pseudomonas fluorescens Pf-5], gi\|6834...	0.0	[6..477]	[1..472]
gi\|49532305, gi\|... - gi\|50086329\|ref\|YP_047839.1\| glutamate synthase subunit beta [Acinetobacter sp. ADP1], gi\|49532305\|e...	0.0	[6..477]	[1..473]
gi\|71736027, gi\|... - gi\|71736027\|ref\|YP_272703.1\| glutamate synthase subunit beta [Pseudomonas syringae pv. phaseolicola ...	0.0	[6..477]	[1..472]
gi\|53612313, gi\|... - gi\|67158022\|ref\|ZP_00419112.1\| Glutamate synthase, NADH/NADPH, small subunit 2 [Azotobacter vineland... gi\|67158022, gi\|... - gi\|67158022\|ref\|ZP_00419112.1\| Glutamate synthase, NADH/NADPH, small subunit 2 [Azotobacter vineland...	0.0	[6..477]	[1..473]

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Predicted Domain #1

Region A:
Residues: [1-477]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERLNSDRL NNDFQFIEVG RKDPKKKLLR QRKREFVEIH DLFKPQQAAD QAHRCLGCGN  60
   61 PYCEWKCPVH NFIPNWLKLV SEGNILAAAE LSHQTNTLPE VCGRVCPQDR LCEGACTLND 120
  121 GFGAVTIGSV EKYITDTAFA MGWRPDLSKV KPTGRRVAVI GAGPAGLGCA DVLVRNGVTP 180
  181 VVFDRNPEIG GLLTFGIPEF KLEKHVLSRR REVFTGMGIE FRLNTEIGKD VTMEQLLDEY 240
  241 DAVFMGMGTY TYMKGGFPGE DLPGVHDALD FLIANVNRNL GFEKSAEDFV DMKGKRVVVL 300
  301 GGGDTAMDCN RTSIRQGAKS VTCAYRRDEE NMPGSRKEVK NAKEEGVKFL FNRQPIAIVG 360
  361 EDRVEGVKVV ETRLGEPDAR GRRSPEPIPG SEEIIPAEAV LIAFGFRPSP APWFERFEIA 420
  421 TDSQGRVVAP AQAQFKHQTS NPKIFAGGDM VRGSDLVVTA IFEGRTAAEG ILDYLGV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	74.0
Match:	1h7xA
Description:	Dihydropyrimidine dehydrogenase, N-terminal domain; Dihydropyrimidine dehydrogenase, domain 4; Dihydropyrimidine dehydrogenase, domain 3; Dihydropyrimidine dehydrogenase, domain 2; Dihydropyrimidine dehydrogenase, C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
glutamate synthase activity	8.25305391467034	bayes_pls_golite062009
glutamate synthase activity, NADH or NADPH as acceptor	8.23578981764913	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor	7.02480361242491	bayes_pls_golite062009
glutamate synthase (NADPH) activity	6.79992270958953	bayes_pls_golite062009
succinate dehydrogenase activity	1.80846474206463	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	1.45813178614374	bayes_pls_golite062009
catalytic activity	1.35682608895635	bayes_pls_golite062009
oxidoreductase activity	1.32475122976745	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	0.384435272305167	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: