YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11352476, gi\|...
Organism:	Pseudomonas aeruginosa
Length:	464 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11352476, gi|....

Description	E-value	Query Range	Subject Range
gi\|107104030 - gi\|107104030\|ref\|ZP_01367948.1\| hypothetical protein PaerPA_01005103 [Pseudomonas aeruginosa PACS2] gi\|94417542, gi\|... - gi\|94417542\|ref\|ZP_01297360.1\| hypothetical protein PaerP_01000859 [Pseudomonas aeruginosa PA7], gi\|... gi\|218894026, gi... - gi\|218894026\|ref\|YP_002442895.1\| replicative DNA helicase [Pseudomonas aeruginosa LESB58], gi\|218774...	0.0	[1..464]	[1..464]
gi\|53726506, gi\|... - gi\|53726506\|ref\|ZP_00141405.2\| COG0305: Replicative DNA helicase [Pseudomonas aeruginosa UCBPP-PA14]...	0.0	[1..464]	[1..464]
gi\|21218457, gi\|... - gi\|21218457\|ref\|NP_631985.1\| replicative DNA helicase [Pseudomonas sp. SLT2001], gi\|17426815\|emb\|CAD...	0.0	[1..464]	[1..464]
gi\|48732180, gi\|... - gi\|77456766\|ref\|YP_346271.1\| replicative DNA helicase [Pseudomonas fluorescens Pf0-1], gi\|77380769\|g...	0.0	[1..464]	[1..464]
gi\|63254559, gi\|... - gi\|66043852\|ref\|YP_233693.1\| replicative DNA helicase [Pseudomonas syringae pv. syringae B728a], gi\|...	0.0	[1..464]	[1..464]
gi\|68348384, gi\|... - gi\|70734085\|ref\|YP_257725.1\| replicative DNA helicase [Pseudomonas fluorescens Pf-5], gi\|68348384\|gb...	0.0	[1..464]	[1..464]
gi\|213967937, gi... - gi\|213967937\|ref\|ZP_03396083.1\| replicative DNA helicase [Pseudomonas syringae pv. tomato T1], gi\|21... gi\|28872043, gi\|... - gi\|28872043\|ref\|NP_794662.1\| replicative DNA helicase [Pseudomonas syringae pv. tomato str. DC3000],... tr\|Q87VK7\|Q87VK7... - Replicative DNA helicase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=dnaB PE=4 SV=1	0.0	[1..464]	[1..464]
gi\|71557969, gi\|... - gi\|71737416\|ref\|YP_272880.1\| replicative DNA helicase [Pseudomonas syringae pv. phaseolicola 1448A],...	0.0	[1..464]	[1..464]
gi\|104783856, gi... - gi\|95112843\|emb\|CAK17571.1\| replicative DNA helicase;chromosome replication, chain elongation [Pseud... gi\|95112843 - gi\|95112843\|emb\|CAK17571.1\| replicative DNA helicase;chromosome replication, chain elongation [Pseud...	0.0	[1..464]	[1..464]
gi\|26991553, gi\|... - gi\|26991553\|ref\|NP_746978.1\| replicative DNA helicase [Pseudomonas putida KT2440], gi\|24986638\|gb\|AA... gi\|12642370 - gi\|12642370\|gb\|AAK00231.1\|AF229444_1 replicative DNA helicase DnaB [Pseudomonas putida]	0.0	[1..464]	[1..464]

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Predicted Domain #1

Region A:
Residues: [1-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEITSPEQY DLETTALKVP PHSIEAEQAV LGGLMLDNNA WERVSDSVSD GDFYRHDHRL  60
   61 IFRAIYKLAE ANQPIDVVTL SEQLEKEGQL AQVGGLAYLG ELAKNIPSVA NIKAYAQIIR 120
  121 ERATLRQLIG ISNEIADSAF HPEGRGANEI LDEAERKIFE VAEARPKTGG PVGISDILVK 180
  181 TIDRIDYLFN TTEALTGVST GFTDLDEKTS GLQPADLIIV AGRPSMGKTT FAMNLVENAV 240
  241 MRTDKAVLVY SLEMPSDSIV MRMLSSLGRI DQTKVRSGKL DDEDWPRLTS AINLLNDKKL 300
  301 FIDDTAGISP SEMRARTRRL VREHGDLALI MIDYLQLMQI PGSSGDNRTN EISEISRSLK 360
  361 ALAKEFNCPV IALSQLNRSL EQRPNKRPVN SDLRESGAIE QDADVIMFVY RDEVYHPETE 420
  421 FKGVAEIIIG KQRNGPIGTV RLAFIGKYTR FENLAAGMYN FEDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	110.0
Match:	2q6tA
Description:	No description for 2q6tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits