YRC Public Data Repository - Protein Structure Prediction

Protein:	GLMM_PSEAE
Organism:	Pseudomonas aeruginosa PAO1
Length:	445 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GLMM_PSEAE.

Description	E-value	Query Range	Subject Range
GLMM_PSEP1 - Phosphoglucosamine mutase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=glmM PE=3 SV=1	0.0	[1..443]	[1..444]
GLMM_PSEPK - Phosphoglucosamine mutase OS=Pseudomonas putida (strain KT2440) GN=glmM PE=3 SV=1	0.0	[1..443]	[1..444]
GLMM_PSEE4 - Phosphoglucosamine mutase OS=Pseudomonas entomophila (strain L48) GN=glmM PE=3 SV=1 gi\|95109010 - gi\|95109010\|emb\|CAK13706.1\| phosphoglucosamine mutase [Pseudomonas entomophila L48]	0.0	[1..445]	[1..446]
GLMM_ALCBS - Phosphoglucosamine mutase OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 /...	0.0	[1..444]	[1..443]
gi\|94426502, gi\|... - gi\|94501389\|ref\|ZP_01307909.1\| phosphoglucosamine mutase [Oceanobacter sp. RED65], gi\|94426502\|gb\|EA...	0.0	[1..444]	[1..442]
GLMM_PSEF5 - Phosphoglucosamine mutase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=glmM PE=3 SV=1	0.0	[1..445]	[1..445]
GLMM_ALKEH - Phosphoglucosamine mutase OS=Alkalilimnicola ehrlichii (strain ATCC BAA-1101 / DSM 17681 / MLHE-1) G...	0.0	[1..445]	[1..445]
GLMM_ACTSZ - Phosphoglucosamine mutase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=glmM PE=3 SV=...	0.0	[3..441]	[4..442]
GLMM_PSEA6 - Phosphoglucosamine mutase OS=Pseudoalteromonas atlantica (strain T6c / ATCC BAA-1087) GN=glmM PE=3 S...	0.0	[2..445]	[3..446]
GLMM2_SHESR - Phosphoglucosamine mutase 2 OS=Shewanella sp. (strain MR-7) GN=glmM2 PE=3 SV=1	0.0	[1..441]	[1..448]

Back

Predicted Domain #1

Region A:
Residues: [1-445]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRKYFGTDG IRGRVGEFPI TPDFVLKLGW AVGMAFRRQG NCRVLIGKDT RSSGYMFESA  60
   61 FEAGLSASGA DTLLLGPMPT PGIAYLTRTF HAEAGVVISA SHNPHDDNGI KFFSGQGTKL 120
  121 PDDVELMIEE LLDAPMTVVE SARLGKVSRI NDAAGRYIEF CKSSVPTSTD FNGLKVVLDC 180
  181 ANGATYKIAP SVFRELGAEV TVLAASPNGL NINDKCGSTH LDGLQAAVVE HHADLGIAFD 240
  241 GDGDRVMMVD HTGAVVDGDE LLFLIARDLQ ESGRLQGGVV GTLMSNLGLE LALQELHIPF 300
  301 VRAKVGDRYV MAELLARNWM LGGENSGHIV CCQNTTTGDA IIAALQVLMA LKHRGQTLAE 360
  361 ARQGIRKCPQ VLINVRFKGE NDPLEHPSVK EASVRVTEQM GGRGRVLLRK SGTEPLVRVM 420
  421 VEGDEEASVR AHAEQLAKIV SEVCA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	123.0
Match:	1wqaA
Description:	Crystal Structure of Pyrococcus horikoshii phosphomannomutase/phosphoglucomutase complexed with Mg2+
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits