YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11352777
Organism:	Pseudomonas aeruginosa
Length:	1161 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11352777.

Description	E-value	Query Range	Subject Range
gi\|150960090, gi... - gi\|94416155\|ref\|ZP_01295985.1\| hypothetical protein PaerP_01001998 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..1161]	[1..1155]
gi\|107099783 - gi\|107099783\|ref\|ZP_01363701.1\| hypothetical protein PaerPA_01000801 [Pseudomonas aeruginosa PACS2] gi\|218893649, gi... - gi\|218893649\|ref\|YP_002442518.1\| type 4 fimbrial biogenesis protein PilY1 [Pseudomonas aeruginosa LE...	0.0	[1..1161]	[1..1163]
gi\|1246302\|gb\|AA... - pilY1 gene product gi\|1246302, gi\|7... - pir\|\|S72645 pilY1 protein - Pseudomonas aeruginosa, gi\|1246302\|gb\|AAA93502.1\| pilY1 [Pseudomonas ae...	0.0	[1..1116]	[41..1156]
gi\|84323201 - gi\|84323201\|ref\|ZP_00971277.1\| COG3419: Tfp pilus assembly protein, tip-associated adhesin PilY1 [Ps...	0.0	[1..996]	[1..998]
PILY1_PSEAB - Type IV pilus biogenesis factor PilY1 OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=pilY1 PE=1 SV...	0.0	[4..1160]	[1..1158]
gi\|88812999, gi\|... - gi\|88812999\|ref\|ZP_01128242.1\| type 4 fimbrial biogenesis protein PilY1 [Nitrococcus mobilis Nb-231]...	0.0	[20..1157]	[8..1178]
gi\|71550688, gi\|... - gi\|71550688\|ref\|ZP_00670780.1\| putative type 4 fimbrial biogenesis protein PilY1 [Nitrosomonas eutro...	0.0	[1..1158]	[2..1143]
gi\|30249707, gi\|... - gi\|30249707\|ref\|NP_841777.1\| putative type 4 fimbrial biogenesis protein PilY1 [Nitrosomonas europae...	0.0	[9..1158]	[4..1143]
gi\|117919536, gi... - gi\|78685789\|ref\|ZP_00850564.1\| similar to Tfp pilus assembly protein tip-associated adhesin PilY1 [S...	0.0	[2..1150]	[32..1216]

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Predicted Domain #1

Region A:
Residues: [1-538]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVLHQIGK TSLAAALSGA VLLSAQTTHA AALSVSQQPL MLIQGVAPNM LVTLDDSGSM  60
   61 AFAYAPDSIS GYGNYTFFAS NSFNPMYFDP NTQYKLPKKL TLVNGQVQIQ DYPAPNFSSA 120
  121 WRNGFTRSGS INLSNSYKVT IEYGRGYDKE STIKADAAYY YDFTGSSSCN RTNQACYTRR 180
  181 YVSTEQRQNF ANWYSFYRTR ALATQTAANL AFYSLPENAR VSWQLLNDSN CNQMGSGSSS 240
  241 GNCFSNYLRD FTGQHRVNFF NWLEKLSVNG GTPLRQAMTR AGEFLKKTGV NGPYAYRPGT 300
  301 QTAPEYSCRG SYHILMTDGL WNNDSANVGN ADSTARNLPD GKSYSSQTPY RDGTFDTLAD 360
  361 QAFHYWATDA RPDIDDNIKP YIPYPDQANP SAEYWNPRND PATWQHMVTY TLGLGLTTSL 420
  421 TSPRWEGSTF SGGYNDIVAG NLSWPRASNN DSNNVYDLWH AAVNSRGEFF SADSPDQLVA 480
  481 AFQDILNRIS GKDLPASRPA ISSSLQEDDT GDKLTRFAYQ TSFASDKNWA GDLTRYSL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.36
Match:	1q0pA
Description:	A domain of Factor B
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [539-636]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTQDKATVQT KLWSAQSILD AMPNGGAGRK IMMAGSGTSG LKEFTWGSLS ADQQRQLNRD  60
   61 PDRNDVADTK GQDRVAFLRG DRRKENSDNF RTRNSILG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [637-1161]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DIINSSPATV GKAQYLTYLA QPIEPSGNYS TFAEAQKTRA PRVYVGANDG MLHGFDTDGN  60
   61 ETFAFIPSAV FEKLHKLTAR GYQGGAHQFY VDGSPVVADA FFGGAWHTVL IGSLRAGGKG 120
  121 LFALDVTDPA NIKLLWEIGV DQEPDLGYSF PKPTVARLHN GKWAVVTGNG YSSLNDKAAL 180
  181 LIIDLETGAI TRKLEVTGRT GVPNGLSSPR LADNNSDGVA DYAYAGDLQG NLWRFDLIAG 240
  241 KVNQDDPFSR ANDGPAVASS FRVSFGGQPL YSAVDSAGAA QAITAAPSLV RHPTRKGYIV 300
  301 IFGTGKYFEN ADARADTSRA QTLYGIWDQQ TKGEAAGSTP RLTRGNLQQQ TLDLQADSTF 360
  361 ASTARTIRIA SQNPVNWLNN DGSTKQSGWY LDFMVNGTLK GEMLIEDMIA IGQVVLLQTI 420
  421 TPNDDPCADG ASNWTYGLDP YTGGRTSFTV FDLARQGVVD SKSDYSYNKQ NVAVSGTEQK 480
  481 GLGGLTLSTN EQGNPEVCSS GECLTVNPGP NTRGRQNWRP IEGKN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.154902
Match:	1flgA
Description:	Ethanol dehydrogenase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.00368972744682	bayes_pls_golite062009
oxidoreductase activity	0.0911950180605715	bayes_pls_golite062009
oxidoreductase activity, acting on CH-OH group of donors	0.0143051164860162	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: