YRC Public Data Repository - Protein Structure Prediction

Protein:	NADD_PSEAE
Organism:	Pseudomonas aeruginosa PAO1
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NADD_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|83753743, gi\|... - gi\|83753746\|pdb\|1YUN\|B Chain B, Crystal Structure Of Nicotinic Acid Mononucleotide Adenylyltransfera...	1.0E-59	[1..214]	[21..234]
gi\|254242690, gi... - gi\|84325138\|ref\|ZP_00973178.1\| COG1057: Nicotinic acid mononucleotide adenylyltransferase [Pseudomon... gi\|107103521 - gi\|107103521\|ref\|ZP_01367439.1\| hypothetical protein PaerPA_01004591 [Pseudomonas aeruginosa PACS2]	2.0E-59	[1..214]	[1..214]
NADD_PSEA7 - Probable nicotinate-nucleotide adenylyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=nadD PE...	1.0E-58	[1..214]	[1..214]
NADD_PSEF5 - Probable nicotinate-nucleotide adenylyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BA...	2.0E-58	[1..214]	[1..214]
gi\|23104126, gi\|... - gi\|67154137\|ref\|ZP_00415882.1\| Cytidyltransferase-related domain:Probable nicotinate-nucleotide aden... gi\|67088270, gi\|... - gi\|67154137\|ref\|ZP_00415882.1\| Cytidyltransferase-related domain:Probable nicotinate-nucleotide aden...	2.0E-58	[1..214]	[1..214]
gi\|77461194, gi\|... - gi\|77461194\|ref\|YP_350701.1\| nicotinic acid mononucleotide adenylyltransferase [Pseudomonas fluoresc...	3.0E-57	[3..214]	[18..229]
tr\|I7B3D2\|I7B3D2... - Probable nicotinate-nucleotide adenylyltransferase OS=Pseudomonas putida (strain DOT-T1E) GN=nadD PE... NADD_PSEPK - Probable nicotinate-nucleotide adenylyltransferase OS=Pseudomonas putida (strain KT2440) GN=nadD PE=... gi\|82714727, gi\|... - gi\|82738231\|ref\|ZP_00901068.1\| Cytidyltransferase-related:Probable nicotinate-nucleotide adenylyltra...	9.0E-57	[3..214]	[19..230]
NADD_PSEE4 - Probable nicotinate-nucleotide adenylyltransferase OS=Pseudomonas entomophila (strain L48) GN=nadD P... gi\|95112757 - gi\|95112757\|emb\|CAK17485.1\| nicotinate-nucleotide adenylyltransferase [Pseudomonas entomophila L48]	6.0E-55	[3..214]	[8..219]
gi\|71737516, gi\|... - gi\|71737516\|ref\|YP_276526.1\| nicotinic acid mononucleotide adenylyltransferase [Pseudomonas syringae...	2.0E-53	[3..214]	[20..231]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKRIGLFGG TFDPVHIGHM RSAVEMAEQF ALDELRLLPN ARPPHRETPQ VSAAQRLAMV  60
   61 ERAVAGVERL TVDPRELQRD KPSYTIDTLE SVRAELAADD QLFMLIGWDA FCGLPTWHRW 120
  121 EALLDHCHIV VLQRPDADSE PPESLRDLLA ARSVADPQAL KGPGGQITFV WQTPLAVSAT 180
  181 QIRALLGAGR SVRFLVPDAV LNYIEAHHLY RAPH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.154902
Match:	1yulA
Description:	Crystal Structure of Nicotinic Acid Mononucleotide Adenylyltransferase from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits