YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11348123
Organism:	Pseudomonas aeruginosa
Length:	340 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11348123.

Description	E-value	Query Range	Subject Range
gi\|152987458, gi... - gi\|94417082\|ref\|ZP_01296904.1\| hypothetical protein PaerP_01001278 [Pseudomonas aeruginosa PA7], gi\|...	9.0E-88	[1..340]	[1..340]
gi\|126196045, gi... - gi\|84325115\|ref\|ZP_00973155.1\| COG1702: Phosphate starvation-inducible protein PhoH, predicted ATPas... gi\|218889736, gi... - gi\|218889736\|ref\|YP_002438600.1\| PhoH family protein [Pseudomonas aeruginosa LESB58], gi\|218769959\|e... gi\|115587241, gi... - gi\|46164599\|ref\|ZP_00205116.1\| COG1702: Phosphate starvation-inducible protein PhoH, predicted ATPas...	1.0E-87	[1..340]	[1..340]
gi\|84319203, gi\|... - gi\|84319203\|ref\|ZP_00967604.1\| COG1702: Phosphate starvation-inducible protein PhoH, predicted ATPas...	3.0E-87	[1..340]	[1..340]
gi\|71735624, gi\|... - gi\|71735624\|ref\|YP_276504.1\| PhoH family protein [Pseudomonas syringae pv. phaseolicola 1448A], gi\|7...	3.0E-83	[1..319]	[1..319]
gi\|59479466, gi\|... - gi\|59711365\|ref\|YP_204141.1\| PhoH-like protein [Vibrio fischeri ES114], gi\|59479466\|gb\|AAW85253.1\| P...	6.0E-83	[1..339]	[38..385]
gi\|66047573, gi\|... - gi\|66047573\|ref\|YP_237414.1\| PhoH-like protein [Pseudomonas syringae pv. syringae B728a], gi\|6325828...	7.0E-83	[1..319]	[1..319]
gi\|69942828, gi\|... - gi\|91792175\|ref\|YP_561826.1\| PhoH-like protein [Shewanella denitrificans OS217], gi\|91714177\|gb\|ABE5...	1.0E-82	[1..332]	[9..344]
tr\|Q87VY0\|Q87VY0... - PhoH-like protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_4805 PE=4 SV=1 gi\|213928686, gi... - gi\|213966836\|ref\|ZP_03394987.1\| PhoH-like protein [Pseudomonas syringae pv. tomato T1], gi\|213928686... gi\|28855173, gi\|... - gi\|28871920\|ref\|NP_794539.1\| PhoH-like protein [Pseudomonas syringae pv. tomato str. DC3000], gi\|288...	1.0E-82	[1..319]	[1..319]
gi\|53613452, gi\|... - gi\|67154197\|ref\|ZP_00415942.1\| PhoH-like protein [Azotobacter vinelandii AvOP], ref\|ZP_00092889.2\| C... gi\|67154197, gi\|... - gi\|67154197\|ref\|ZP_00415942.1\| PhoH-like protein [Azotobacter vinelandii AvOP], gi\|67088330\|gb\|EAM07...	2.0E-82	[1..339]	[1..336]
gi\|88705749, gi\|... - gi\|88705749\|ref\|ZP_01103459.1\| phosphate starvation-induced protein [gamma proteobacterium KT 71], g...	3.0E-82	[6..324]	[19..338]

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Predicted Domain #1

Region A:
Residues: [1-340]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAPQELHRF ILEPFDARSF ATLCGQFDEH LHQIEKRLDI EIRNRGNQFE LAGEPRRTKV  60
   61 AERLLQRLYR EAQNGTDLTP DTVHLYLQES GLEDLEELQS APQVTLKSRK AHIRPRGANQ 120
  121 QRYVKAILDH DINFGIGPAG TGKTYLAVAC AVDALEREQI RRILLVRPAV EAGEKLGFLP 180
  181 GDLSQKIDPY LRPLYDALYE MLGFEHVAKL IERNVIEVAP LAYMRGRTLN NSFIILDESQ 240
  241 NTTVEQMKMF LTRIGFGSTA VITGDVTQVD LPRGTRSGLK HVIEVLQDVP GISFTHFKPK 300
  301 DVVRHPLVQR IVEAYERHES RQQGQVRPVE GTGKGGHDAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.39794
Match:	1gm5A
Description:	RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
binding	1.0816829831484	bayes_pls_golite062009
hydrolase activity	1.01356015253096	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: