YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11351452
Organism:	Pseudomonas aeruginosa
Length:	257 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11351452.

Description	E-value	Query Range	Subject Range
gi\|218889899, gi... - gi\|218889899\|ref\|YP_002438763.1\| putative methyltransferase [Pseudomonas aeruginosa LESB58], gi\|2187... gi\|194553493, gi... - gi\|254242508\|ref\|ZP_04935830.1\| hypothetical protein PA2G_03259 [Pseudomonas aeruginosa 2192], gi\|19... gi\|116051842, gi... - gi\|116051842\|ref\|YP_789315.1\| putative methyltransferase [Pseudomonas aeruginosa UCBPP-PA14], gi\|115...	5.0E-70	[1..257]	[1..257]
gi\|68346591, gi\|... - gi\|70732292\|ref\|YP_262048.1\| RNA methyltransferase [Pseudomonas fluorescens Pf-5], gi\|68346591\|gb\|AA...	1.0E-67	[1..256]	[1..256]
gi\|46164503 - gi\|46164503\|ref\|ZP_00205098.1\| COG0565: rRNA methylase [Pseudomonas aeruginosa UCBPP-PA14] gi\|84325546 - gi\|84325546\|ref\|ZP_00973581.1\| COG0565: rRNA methylase [Pseudomonas aeruginosa 2192]	2.0E-67	[8..257]	[2..251]
gi\|82714507, gi\|... - gi\|82738427\|ref\|ZP_00901260.1\| RNA methyltransferase TrmH, group 1 [Pseudomonas putida F1], gi\|82714... tr\|I7C0S9\|I7C0S9... - RNA methyltransferase OS=Pseudomonas putida (strain DOT-T1E) GN=yfhQ PE=4 SV=1	3.0E-67	[1..256]	[29..279]
gi\|107103337 - gi\|107103337\|ref\|ZP_01367255.1\| hypothetical protein PaerPA_01004406 [Pseudomonas aeruginosa PACS2] gi\|84319381 - gi\|84319381\|ref\|ZP_00967778.1\| COG0565: rRNA methylase [Pseudomonas aeruginosa C3719]	5.0E-67	[8..257]	[2..251]
gi\|26987575, gi\|... - gi\|26987575\|ref\|NP_743000.1\| RNA methyltransferase [Pseudomonas putida KT2440], gi\|24982250\|gb\|AAN66...	1.0E-66	[1..256]	[1..251]
gi\|67086301, gi\|... - gi\|67156542\|ref\|ZP_00418135.1\| RNA methyltransferase TrmH, group 1 [Azotobacter vinelandii AvOP], gi...	1.0E-66	[1..255]	[29..283]
tr\|Q887A4\|Q887A4... - RNA methyltransferase, TrmH family, group 1 OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PS... gi\|28851865, gi\|... - gi\|28868627\|ref\|NP_791246.1\| RNA methyltransferase [Pseudomonas syringae pv. tomato str. DC3000], gi...	2.0E-66	[1..256]	[1..256]
gi\|3046324, gi\|1... - gi\|3046324\|gb\|AAC24483.1\| unknown [Azotobacter vinelandii], pir\|\|T44278 conserved hypothetical prote...	3.0E-66	[1..255]	[1..255]
gi\|94412419 - gi\|94412419\|ref\|ZP_01292348.1\| hypothetical protein PaerP_01005784 [Pseudomonas aeruginosa PA7]	4.0E-66	[8..257]	[2..251]

Back

Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDRIRVVLV NTSHPGNIGG AARAMKNMGL SQLVLVQPES FPHGDAVARA SGATDILDAA  60
   61 RVVDTLEEAL IGCSVVLGTS ARDRRIPWPL LDPRECATTC LEHLEANGEV ALVFGREYAG 120
  121 LTNEELQRCQ FHVHIPSDPE FGSLNLAAAV QVLTYEVRMA WLAAQGKPTK MEKFESTSML 180
  181 NTEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.221849
Match:	1v2xA
Description:	TrmH
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
RNA methyltransferase activity	4.77771076540343	bayes_pls_golite062009
methyltransferase activity	4.0901595540349	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	4.01958090893547	bayes_pls_golite062009
rRNA methyltransferase activity	3.659149846946	bayes_pls_golite062009
tRNA methyltransferase activity	3.35439517507384	bayes_pls_golite062009
tRNA (guanine) methyltransferase activity	3.10060782124076	bayes_pls_golite062009
tRNA (guanine-N1-)-methyltransferase activity	2.87460031907348	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	2.59156540645412	bayes_pls_golite062009
transferase activity	1.84002196534744	bayes_pls_golite062009
catalytic activity	1.16774040077235	bayes_pls_golite062009
rRNA (guanine) methyltransferase activity	0.47764353619615	bayes_pls_golite062009
N-methyltransferase activity	0.0655574594365502	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [185-257]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTADELELYY AHLERTLIDI GFLDPEKPRH LMSRLRRLYG RSAISKLEMN ILRGILTETQ  60
   61 KVARGLSYKR SDD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: