YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9949987, gi\|1...
Organism:	Pseudomonas aeruginosa PAO1
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9949987, gi|1....

Description	E-value	Query Range	Subject Range
gi\|49077878 - gi\|49077878\|gb\|AAT49727.1\| PA3813 [synthetic construct]	3.0E-51	[1..128]	[1..128]
gi\|83748486, gi\|... - gi\|83748486\|ref\|ZP_00945508.1\| IscU protein [Ralstonia solanacearum UW551], gi\|83724897\|gb\|EAP72053.... gi\|206595032, gi... - gi\|207743633\|ref\|YP_002260025.1\| iron-binding protein [Ralstonia solanacearum IPO1609], gi\|206595032... gi\|207725258, gi... - gi\|207725258\|ref\|YP_002255654.1\| iron-binding protein [Ralstonia solanacearum MolK2], gi\|206590492\|e...	3.0E-50	[1..126]	[1..126]
gi\|85773532, gi\|... - gi\|86157021\|ref\|YP_463806.1\| scaffold protein [Anaeromyxobacter dehalogenans 2CP-C], gi\|85773532\|gb\|...	3.0E-50	[1..126]	[1..126]
gi\|66044486, gi\|... - gi\|66044486\|ref\|YP_234327.1\| scaffold protein [Pseudomonas syringae pv. syringae B728a], gi\|63255193... tr\|F6AAZ5\|F6AAZ5... - FeS cluster assembly scaffold IscU OS=Pseudomonas fulva (strain 12-X) GN=Psefu_3302 PE=4 SV=1 gi\|71737697, gi\|... - gi\|71737697\|ref\|YP_273568.1\| scaffold protein [Pseudomonas syringae pv. phaseolicola 1448A], gi\|7155... gi\|51102910 - gi\|51102910\|gb\|AAT96059.1\| IscU [Pseudomonas viridiflava] gi\|237800033 - gi\|237800033\|ref\|ZP_04588494.1\| scaffold protein [Pseudomonas syringae pv. oryzae str. 1_6]	4.0E-50	[1..128]	[1..128]
gi\|67156538, gi\|... - gi\|67156538\|ref\|ZP_00418131.1\| Nitrogen-fixing NifU-like, N-terminal [Azotobacter vinelandii AvOP], ... ISCU_AZOVI - Iron-sulfur cluster assembly scaffold protein IscU OS=Azotobacter vinelandii GN=iscU PE=1 SV=1	4.0E-50	[1..128]	[1..128]
gi\|1075072 - gi\|1075072\|pir\|\|C64064 iron-sulfur cofactor synthesis protein nifU homolog HI0377 [similarity] - Hae...	5.0E-50	[1..126]	[26..151]
gi\|33573345 - gi\|33573345\|emb\|CAE37329.1\| [Fe-S] cluster formation/repair protein [Bordetella parapertussis] gi\|33596644 - gi\|33596644\|ref\|NP_884287.1\| scaffold protein [Bordetella parapertussis 12822] gi\|33575695, gi\|... - gi\|33601260\|ref\|NP_888820.1\| scaffold protein [Bordetella bronchiseptica RB50], gi\|33575695\|emb\|CAE3... gi\|33572510, gi\|... - gi\|33592862\|ref\|NP_880506.1\| scaffold protein [Bordetella pertussis Tohama I], gi\|33572510\|emb\|CAE42...	5.0E-50	[1..126]	[1..126]
gi\|68346587, gi\|... - gi\|70732288\|ref\|YP_262044.1\| scaffold protein [Pseudomonas fluorescens Pf-5], gi\|68346587\|gb\|AAY9419... gi\|119859642, gi... - gi\|170723496\|ref\|YP_001751184.1\| scaffold protein [Pseudomonas putida W619], gi\|169761499\|gb\|ACA7481...	5.0E-50	[1..128]	[1..128]
gi\|167031901, gi... - gi\|167031901\|ref\|YP_001667132.1\| scaffold protein [Pseudomonas putida GB-1], gi\|166858389\|gb\|ABY9679... tr\|E4R523\|E4R523... - IscU OS=Pseudomonas putida (strain BIRD-1) GN=iscU PE=4 SV=1 gi\|24982255, gi\|... - gi\|26987579\|ref\|NP_743004.1\| scaffold protein [Pseudomonas putida KT2440], gi\|24982255\|gb\|AAN66468.1... gi\|148510175, gi... - gi\|82738431\|ref\|ZP_00901264.1\| FeS cluster assembly scaffold IscU [Pseudomonas putida F1], gi\|827145... tr\|I7CA08\|I7CA08... - Scaffold protein OS=Pseudomonas putida (strain DOT-T1E) GN=iscU PE=4 SV=1	6.0E-50	[1..128]	[1..128]

Back

Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYSEKVIDH YENPRNVGKL DAADPNVGTG MVGAPACGDV MRLQIKVNEQ GVIEDAKFKT  60
   61 YGCGSAIASS SLATEWMKGK TLDEAETIKN TTIAEELALP PVKIHCSVLA EDAIKAAVRD 120
  121 YKQKKGLL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	51.522879
Match:	1q48A
Description:	Solution NMR Structure of The Haemophilus Influenzae Iron-Sulfur Cluster Assembly Protein U (IscU) with Zinc Bound at the Active Site. Northeast Structural Genomics Consortium Target IR24. This protein is not apo, it is a model without zinc binding constr
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.626732820625785	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: