YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9949787, gi\|1...
Organism:	Pseudomonas aeruginosa PAO1
Length:	283 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9949787, gi|1....

Description	E-value	Query Range	Subject Range
gi\|94414764, gi\|... - gi\|94414764\|ref\|ZP_01294619.1\| hypothetical protein PaerP_01003520 [Pseudomonas aeruginosa PA7], gi\|...	3.0E-62	[1..283]	[1..283]
gi\|77381356, gi\|... - gi\|77457353\|ref\|YP_346858.1\| putative esterase [Pseudomonas fluorescens Pf0-1], gi\|77381356\|gb\|ABA72...	1.0E-61	[3..282]	[1..280]
gi\|84325694, gi\|... - gi\|84325694\|ref\|ZP_00973727.1\| COG0627: Predicted esterase [Pseudomonas aeruginosa 2192], gi\|2542423...	2.0E-61	[1..283]	[1..283]
gi\|107103142 - gi\|107103142\|ref\|ZP_01367060.1\| hypothetical protein PaerPA_01004211 [Pseudomonas aeruginosa PACS2]	4.0E-61	[1..283]	[1..283]
gi\|115586846, gi... - gi\|46164341\|ref\|ZP_00137017.2\| COG0627: Predicted esterase [Pseudomonas aeruginosa UCBPP-PA14], gi\|1...	2.0E-60	[1..283]	[1..283]
gi\|54307978, gi\|... - gi\|54307978\|ref\|YP_128998.1\| putative esterase [Photobacterium profundum SS9], gi\|46912404\|emb\|CAG19...	2.0E-60	[3..281]	[1..279]
gi\|90438696, gi\|... - gi\|90579811\|ref\|ZP_01235619.1\| putative esterase [Vibrio angustum S14], gi\|90438696\|gb\|EAS63879.1\| p...	4.0E-60	[3..282]	[1..281]
gi\|194547527, gi... - gi\|84319608\|ref\|ZP_00968002.1\| COG0627: Predicted esterase [Pseudomonas aeruginosa C3719], gi\|254236...	4.0E-60	[1..283]	[1..283]
gi\|49083277 - gi\|49083277\|gb\|AAT50990.1\| PA3628 [synthetic construct]	5.0E-60	[1..283]	[1..283]
gi\|70728583, gi\|... - gi\|70728583\|ref\|YP_258332.1\| esterase, putative [Pseudomonas fluorescens Pf-5], gi\|68342882\|gb\|AAY90...	7.0E-60	[3..282]	[1..280]

Back

Predicted Domain #1

Region A:
Residues: [1-283]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDSLELIGS QKTFGGWHQR YRHFSRTLNC EMVFAIYLPP QAEPEAALPA LYWLSGLTCT  60
   61 DENFMQKAGA QRVAAELGLV LVAPDTSPRG SGVPGDPDGA WDFGLGAGFY LNATQEPWAA 120
  121 HYRMHDYVVH ELPALIEAHF PVSRRRGISG HSMGGHGALV CALRNPGRYL SLSAFAPICH 180
  181 PSDCPWGQKA FSRYLGEDPA AWREWDACAL LEGASERLPI LVDQGERDDF LAVQLKPEAL 240
  241 RNAADKAGHP LELRLQPGYD HSYYFIASFI EDHLRHHAGV LNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.0
Match:	1pv1A
Description:	Crystal Structure Analysis of Yeast Hypothetical Protein: YJG8_YEAST
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
S-formylglutathione hydrolase activity	2.11404818814754	bayes_pls_golite062009
hydrolase activity	1.75934962198703	bayes_pls_golite062009
catalytic activity	1.39629727416851	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.09488027320166	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: