YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9949711, gi\|1...
Organism:	Pseudomonas aeruginosa PAO1
Length:	464 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9949711, gi|1....

Description	E-value	Query Range	Subject Range
gi\|84325874, gi\|... - gi\|84325874\|ref\|ZP_00973906.1\| COG1004: Predicted UDP-glucose 6-dehydrogenase [Pseudomonas aeruginos...	0.0	[1..464]	[1..464]
gi\|116051557, gi... - gi\|32038677\|ref\|ZP_00136949.1\| COG1004: Predicted UDP-glucose 6-dehydrogenase [Pseudomonas aeruginos... gi\|218770437, gi... - gi\|218890214\|ref\|YP_002439078.1\| putative nucleotide sugar dehydrogenase [Pseudomonas aeruginosa LES... gi\|107103071 - gi\|107103071\|ref\|ZP_01366989.1\| hypothetical protein PaerPA_01004140 [Pseudomonas aeruginosa PACS2]	0.0	[1..464]	[1..464]
gi\|94415301, gi\|... - gi\|94415301\|ref\|ZP_01295145.1\| hypothetical protein PaerP_01002854 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..464]	[1..464]
gi\|88949689, gi\|... - gi\|88949689\|ref\|ZP_01152304.1\| UDP-glucose 6-dehydrogenase [Halorhodospira halophila SL1], gi\|889268...	0.0	[1..447]	[1..447]
gi\|114225845, gi... - gi\|78702286\|ref\|ZP_00866726.1\| UDP-glucose 6-dehydrogenase [Alkalilimnicola ehrlichei MLHE-1], gi\|78...	0.0	[1..443]	[1..443]
gi\|77955807, gi\|... - gi\|77955807\|ref\|ZP_00820145.1\| UDP-glucose 6-dehydrogenase [Marinobacter aquaeolei VT8], gi\|77865306...	0.0	[1..443]	[1..443]
gi\|76590942, gi\|... - gi\|76793760\|ref\|ZP_00776242.1\| UDP-glucose 6-dehydrogenase [Pseudoalteromonas atlantica T6c], gi\|765...	0.0	[1..443]	[1..443]
gi\|194309052, gi... - gi\|68551397\|ref\|ZP_00590806.1\| UDP-glucose 6-dehydrogenase [Pelodictyon phaeoclathratiforme BU-1], g...	0.0	[1..440]	[1..440]
gi\|67784592, gi\|... - gi\|67917829\|ref\|ZP_00511433.1\| UDP-glucose 6-dehydrogenase [Chlorobium limicola DSM 245], gi\|6778459...	0.0	[1..439]	[1..439]
gi\|77165481, gi\|... - gi\|77165481\|ref\|YP_344006.1\| UDP-glucose 6-dehydrogenase [Nitrosococcus oceani ATCC 19707], gi\|76883... gi\|207090946 - gi\|207090946\|gb\|EDZ68217.1\| nucleotide sugar dehydrogenase subfamily [Nitrosococcus oceani AFC27] gi\|254434613, gi... - gi\|254434613\|ref\|ZP_05048121.1\| nucleotide sugar dehydrogenase subfamily [Nitrosococcus oceani AFC27...	0.0	[1..444]	[1..444]

Back

Predicted Domain #1

Region A:
Residues: [1-464]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKISVFGSGY VGLVQAAVLA EVGHDVLCMD IDRNKVERLA QGLASIYEPG LDALLREGLD  60
   61 SGRLRFSSDA RLAVEHGRVQ FIAVGTPPGE DGAADLGAVF VVADAIAEHR RKPVIVVEKS 120
  121 TVPVGTGDRL RAHIERRLEA DGRELEFEIV SNPEFLKEGS AVADCRRPDR IVVGCDNEEV 180
  181 RQVMRELYEP FNRNHDRMLF MGLRSAELTK YAANGMLATK ISFINQIAEL AEHLGADIEA 240
  241 VRQGIGADPR IGYHFIYPGC GYGGSCFPKD MRALIHSAEQ AHCSSDLLQA VEAINRRQKH 300
  301 KLFERIRVFY DGDLRGKTFA LWGLAFKPNT DDMRDAPSRE LMEALWRHGA QVRAYDPEAM 360
  361 QETQRLYGHD ERLSLMGTPE ATLGGADALV ICTEWQQFKA PDFELLKERL KAPVIFDGRN 420
  421 LYDPERMARH GFHYYPMGRG QSCSLPINEA SLAQEDGMRL LRQA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	93.221849
Match:	2q3eA
Description:	No description for 2q3eA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits