YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15598546, gi\|...
Organism:	Pseudomonas aeruginosa PAO1
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15598546, gi|....

Description	E-value	Query Range	Subject Range
gi\|49082058 - gi\|49082058\|gb\|AAT50429.1\| PA3350 [synthetic construct]	3.0E-66	[1..232]	[1..232]
gi\|107102882 - gi\|107102882\|ref\|ZP_01366800.1\| hypothetical protein PaerPA_01003950 [Pseudomonas aeruginosa PACS2]	9.0E-66	[1..232]	[1..232]
gi\|116051365, gi... - gi\|46164182\|ref\|ZP_00136722.2\| COG1261: Flagellar basal body P-ring biosynthesis protein [Pseudomona...	2.0E-65	[1..232]	[1..232]
gi\|94413584, gi\|... - gi\|94413584\|ref\|ZP_01293463.1\| hypothetical protein PaerP_01004600 [Pseudomonas aeruginosa PA7], gi\|...	4.0E-64	[1..232]	[1..232]
gi\|77460475, gi\|... - gi\|77460475\|ref\|YP_349982.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas fluo...	7.0E-63	[1..232]	[1..232]
gi\|70731829, gi\|... - gi\|70731829\|ref\|YP_261571.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas fluo...	2.0E-62	[1..232]	[22..253]
gi\|82737704, gi\|... - gi\|82737704\|ref\|ZP_00900550.1\| flagella basal body P-ring formation protein FlgA [Pseudomonas putida...	6.0E-62	[1..232]	[19..250]
gi\|24986118, gi\|... - gi\|26991083\|ref\|NP_746508.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas puti...	2.0E-59	[15..232]	[8..225]
gi\|213927892, gi... - gi\|213967591\|ref\|ZP_03395739.1\| flagellar protein [Pseudomonas syringae pv. tomato T1], gi\|213927892... gi\|28869130, gi\|... - gi\|28869130\|ref\|NP_791749.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas syri... tr\|Q885A9\|Q885A9... - Flagellar protein, putative OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_1926 PE=4 SV...	1.0E-58	[13..232]	[30..248]
gi\|66046716, gi\|... - gi\|66046716\|ref\|YP_236557.1\| flagellar basal body P-ring biosynthesis protein FlgA [Pseudomonas syri...	4.0E-58	[11..232]	[32..252]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGLGYLCAA NNSQAQGFTA PEVLIGSTQG FLEFKVEEYL QNSGLDGRYQ IQVNRVDPRL  60
   61 RLAECDRDLT LSQESPAQPI GRVTVRISCE GSA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [94-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWTIFMPAQV KLFRQVVVAV QPLKRAHVLE DADIALVERD VGLLTQGYLT DPARVVGQKL  60
   61 RRPVVNDQVL APVFLEQAEA VRKGDQVVIL ARTATINVKM PGEALSDGAP GQQIRVRNLR 120
  121 SQRIIKARVI EPGTVEVNM

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.73
Match:	1wvoA
Description:	Solution structure of RSGI RUH-029, an antifreeze protein like domain in human N-acetylneuraminic acid phosphate synthase gene.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits