YRC Public Data Repository - Protein Structure Prediction

Protein:	MINE_PSEAE
Organism:	Pseudomonas aeruginosa PAO1
Length:	84 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MINE_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|95109614 - gi\|95109614\|emb\|CAK14315.1\| cell division topological specificity factor MinE [Pseudomonas entomophi... MINE_PSEE4 - Cell division topological specificity factor OS=Pseudomonas entomophila (strain L48) GN=minE PE=3 SV...	1.0E-30	[1..84]	[1..84]
MINE_PSEPF - Cell division topological specificity factor OS=Pseudomonas fluorescens (strain Pf0-1) GN=minE PE=3 ...	2.0E-30	[1..84]	[1..84]
tr\|I7B9M4\|I7B9M4... - Cell division topological specificity factor OS=Pseudomonas putida (strain DOT-T1E) GN=minE PE=3 SV=... MINE_PSEP1 - Cell division topological specificity factor OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=minE... MINE_PSEPK - Cell division topological specificity factor OS=Pseudomonas putida (strain KT2440) GN=minE PE=3 SV=1 tr\|E4REQ1\|E4REQ1... - Cell division topological specificity factor OS=Pseudomonas putida (strain BIRD-1) GN=minE PE=3 SV=1 MINE_PSEPG - Cell division topological specificity factor OS=Pseudomonas putida (strain GB-1) GN=minE PE=3 SV=1	3.0E-30	[1..84]	[1..84]
gi\|49082426 - gi\|49082426\|gb\|AAT50613.1\| PA3245 [synthetic construct]	5.0E-30	[1..84]	[1..84]
MINE_PSEF5 - Cell division topological specificity factor OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477)...	2.0E-29	[1..84]	[1..84]
MINE_PSEU2 - Cell division topological specificity factor OS=Pseudomonas syringae pv. syringae (strain B728a) GN=... tr\|F3GDU4\|F3GDU4... - Cell division topological specificity factor OS=Pseudomonas syringae pv. pisi str. 1704B GN=minE PE=...	4.0E-29	[1..84]	[1..84]
MINE_PSESM - Cell division topological specificity factor OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=m... MINE_PSESM - Cell division topological specificity factor OS=Pseudomonas syringae pv. tomato GN=minE PE=3 SV=1 MINE_PSE14 - Cell division topological specificity factor OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448... gi\|213969740, gi... - gi\|213969740\|ref\|ZP_03397875.1\| cell division topological specificity factor MinE [Pseudomonas syrin...	1.0E-28	[1..84]	[1..84]
gi\|67155138, gi\|... - gi\|67155138\|ref\|ZP_00416766.1\| Septum formation topological specificity factor MinE [Azotobacter vin... MINE_AZOVD - Cell division topological specificity factor OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) G...	1.0E-28	[1..84]	[1..84]
gi\|86163238, gi\|... - gi\|87121395\|ref\|ZP_01077284.1\| cell division topological specificity factor MinE [Marinomonas sp. ME...	5.0E-27	[1..84]	[1..84]
MINE_SHESM - Cell division topological specificity factor OS=Shewanella sp. (strain MR-4) GN=minE PE=3 SV=1 MINE_SHESR - Cell division topological specificity factor OS=Shewanella sp. (strain MR-7) GN=minE PE=3 SV=1 MINE_SHESA - Cell division topological specificity factor OS=Shewanella sp. (strain ANA-3) GN=minE PE=3 SV=1	2.0E-26	[1..84]	[1..85]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLDFFRSR KSQNSASIAK ERLQIIVAHE RGQRAQPDYL PQLQKDLLEV IRKYVPIDQE  60
   61 QIQVELENQG NCSILELNIT LPDR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.69897
Match:	1ev0A
Description:	Cell division protein MinE topological specificity domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits