YRC Public Data Repository - Protein Structure Prediction

Protein:	UBIG_PSEAE
Organism:	Pseudomonas aeruginosa PAO1
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for UBIG_PSEAE.

Description	E-value	Query Range	Subject Range
gi\|94499386, gi\|... - gi\|94499386\|ref\|ZP_01305923.1\| 3-demethylubiquinone-9 3-methyltransferase [Oceanobacter sp. RED65], ...	2.0E-50	[1..232]	[1..232]
UBIG_PSEAB - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=ubiG PE... gi\|107102701 - gi\|107102701\|ref\|ZP_01366619.1\| hypothetical protein PaerPA_01003767 [Pseudomonas aeruginosa PACS2] gi\|126195237, gi... - gi\|84326079\|ref\|ZP_00974109.1\| COG2227: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol met... gi\|84319998, gi\|... - gi\|84319998\|ref\|ZP_00968384.1\| COG2227: 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol met...	2.0E-50	[1..232]	[1..232]
gi\|49082032 - gi\|49082032\|gb\|AAT50416.1\| PA3171 [synthetic construct]	4.0E-50	[1..232]	[1..232]
UBIG_PSEA7 - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas aeruginosa (strain PA7) GN=ubiG PE=3 SV=1	4.0E-50	[1..232]	[1..232]
gi\|28868948, gi\|... - gi\|28868948\|ref\|NP_791567.1\| 3-demethylubiquinone-9 3-methyltransferase [Pseudomonas syringae pv. to...	7.0E-49	[1..232]	[8..239]
UBIG_PSEF5 - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) ...	1.0E-48	[1..231]	[1..231]
UBIG_PSESM - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=ub... gi\|213926657, gi... - gi\|213968724\|ref\|ZP_03396866.1\| 3-demethylubiquinone-9 3-methyltransferase [Pseudomonas syringae pv.... UBIG_PSESM - 3-demethylubiquinone-9 3-methyltransferase OS=Pseudomonas syringae pv. tomato GN=ubiG PE=3 SV=2	2.0E-48	[1..232]	[1..232]
tr\|E4RDT7\|E4RDT7... - 3-demethylubiquinone-9 3-methyltransferase OS=Pseudomonas putida (strain BIRD-1) GN=ubiG PE=3 SV=1 UBIG_PSEP1 - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=ubiG ... tr\|I7C6V2\|I7C6V2... - 3-demethylubiquinone-9 3-methyltransferase OS=Pseudomonas putida (strain DOT-T1E) GN=ubiG PE=3 SV=1 UBIG_PSEPK - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas putida (strain KT2440) GN=ubiG PE=3 SV=1	2.0E-48	[1..231]	[1..231]
UBIG_PSEE4 - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas entomophila (strain L48) GN=ubiG PE=3 SV=... gi\|95109652 - gi\|95109652\|emb\|CAK14353.1\| 3-demethylubiquinone-9 3-methyltransferase [Pseudomonas entomophila L48]	2.0E-48	[1..231]	[1..231]
UBIG_PSEU2 - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=u... UBIG_PSE14 - Ubiquinone biosynthesis O-methyltransferase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A...	3.0E-48	[1..232]	[1..232]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVDHAEIA KFEALAHRWW DRESEFKPLH DINPLRVNWI DERAGLAGKK VLDIGCGGGI  60
   61 LSEAMAQRGA SVTGIDMGEA PLAVARLHQL ESGVAVDYRQ ITAEQMAEEM PGQFDVVTCL 120
  121 EMLEHVPDPA SVIRACHRLV KPGGQVFLST INRNPKAYLF AVIGAEYILQ LLPRGTHDFR 180
  181 KFIRPSELGA WSREAGLEVK DIIGLTYNPL TKHYKLANDV DVNYMVQTKR EA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.30103
Match:	1vl5A
Description:	Crystal structure of hypothetical protein (BH2331) from Bacillus halodurans at 1.95 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.25333584501255	bayes_pls_golite062009
transferase activity	1.07321114919891	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	0.612108481676679	bayes_pls_golite062009
methyltransferase activity	0.606225212585352	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.14147363365106	bayes_pls_golite062009
binding	0.109975487409217	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: