YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11351169
Organism:	Pseudomonas aeruginosa
Length:	714 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11351169.

Description	E-value	Query Range	Subject Range
gi\|116050641, gi... - gi\|32037691\|ref\|ZP_00135963.1\| COG0840: Methyl-accepting chemotaxis protein [Pseudomonas aeruginosa ...	0.0	[1..714]	[1..714]
gi\|94413158 - gi\|94413158\|ref\|ZP_01293049.1\| hypothetical protein PaerP_01005092 [Pseudomonas aeruginosa PA7]	0.0	[1..696]	[1..696]
gi\|26990269, gi\|... - gi\|26990269\|ref\|NP_745694.1\| methyl-accepting chemotaxis transducer [Pseudomonas putida KT2440], gi\|...	0.0	[1..713]	[1..713]
gi\|70731369, gi\|... - gi\|70731369\|ref\|YP_261110.1\| methyl-accepting chemotaxis transducer [Pseudomonas fluorescens Pf-5], ...	0.0	[1..713]	[48..761]
gi\|148511496, gi... - gi\|82735642\|ref\|ZP_00898504.1\| Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer...	0.0	[1..713]	[1..713]
gi\|77383995, gi\|... - gi\|77459992\|ref\|YP_349499.1\| chemotaxis sensory transducer [Pseudomonas fluorescens Pf0-1], gi\|77383...	0.0	[1..713]	[1..714]
gi\|104782061, gi... - gi\|95111048\|emb\|CAK15768.1\| putative methyl-accepting chemotaxis transducer [Pseudomonas entomophila... gi\|95111048 - gi\|95111048\|emb\|CAK15768.1\| putative methyl-accepting chemotaxis transducer [Pseudomonas entomophila...	0.0	[2..713]	[3..714]
gi\|218893730, gi... - gi\|218893730\|ref\|YP_002442599.1\| putative chemotaxis transducer [Pseudomonas aeruginosa LESB58], gi\|... gi\|15599829, gi\|... - gi\|9950886\|gb\|AAG08021.1\|AE004877_8 probable chemotaxis transducer [Pseudomonas aeruginosa PAO1], gi... gi\|11351176 - pir\|\|E83067 probable chemotaxis transducer PA4633 [imported] - Pseudomonas aeruginosa (strain PAO1)	0.0	[3..713]	[1..711]
gi\|107099702 - gi\|107099702\|ref\|ZP_01363620.1\| hypothetical protein PaerPA_01000720 [Pseudomonas aeruginosa PACS2]	0.0	[3..713]	[1..711]

Back

Predicted Domain #1

Region A:
Residues: [1-339]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLRRLSIQW KITLLAGLCL LGVVALLVGL SVYRMQHSSV LVKSASTQML DESARLRLEA  60
   61 RGELQALRIQ RYFMDAFQYG KGFSRQILFL RDQAQKRFLD AYDLREDLTR QVRTALAANP 120
  121 EVLGLYVVFE PNALDGKDEL FVDQPALGSN DKGRFSLYWA QATPGQLESE SMIESELADT 180
  181 SSGPSGAAYN AWYTCPKESG QPCVLDPYFD KVGERQLLMT SIAFPLELDG KVIGVMGLDI 240
  241 NLSNLQALSE QGNRELYDGV GQVGILSPAG LFAGNSRDAG LLGKNLAKAD PQHAGELLQL 300
  301 LAAGKSRLFN ENDDLKVLQP LQPIPGAKPW GVLLEVPKS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.55
Match:	2p7jA
Description:	No description for 2p7jA was found.

Predicted functions:

Term	Confidence	Notes
binding	0.150351422026587	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [340-433]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ALLGPALALE RQLDDMRREG TWVELGLGLG AAVLGLLVLW LSARGVTRPI LGVAHMLRDI  60
   61 ASGEGDLTQR LPHTGRDELG ELAGWFNRFL DKLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.24
Match:	2f95B
Description:	M intermediate structure of sensory rhodopsin II/transducer complex in combination with the ground state structure
Matching Structure (courtesy of the PDB):

Predicted Domain #3

Region A:
Residues: [434-714]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PIIRDVKVSV RDARSTADQS AAISSQTSAG MQQQFREIDQ VATASHEMTA TAQDVARSAA  60
   61 QAADAARGAD QATRDGLALI DRTTQSIDSL AANLTSAMGQ VEQLASSSEE IGSVLEVIRA 120
  121 IAEQTNLLAL NAAIEAARAG DAGRGFAVVA DEVRNLARRT QDSVEQIRGV IEGLQQGTRD 180
  181 VVDAMHGSHR QAQGSVEQVD EAVAALQRIG EAVTVINDMN LQIASAAEEQ SSVAEEINRN 240
  241 VAAIRDVTES LSSQAEESAQ VSQSLNRLAN HQQGLMEQFK A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.0
Match:	2ch7A
Description:	No description for 2ch7A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: