YRC Public Data Repository - Protein Structure Prediction

Protein:	NUOB_PSEAB
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	225 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NUOB_PSEAB.

Description	E-value	Query Range	Subject Range
NUOB_PSEP1 - NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=nuoB PE=3 S... NUOB_PSEPK - NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain KT2440) GN=nuoB PE=3 SV=1 tr\|E4RED2\|E4RED2... - NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain BIRD-1) GN=nuoB PE=3 SV=1 tr\|I7B4J6\|I7B4J6... - NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain DOT-T1E) GN=nuoB PE=3 SV=1	8.0E-82	[1..225]	[1..225]
NUOB_PSEA7 - NADH-quinone oxidoreductase subunit B OS=Pseudomonas aeruginosa (strain PA7) GN=nuoB PE=3 SV=1	8.0E-82	[1..225]	[1..225]
gi\|95111509 - gi\|95111509\|emb\|CAK16229.1\| NADH dehydrogenase I chain B [Pseudomonas entomophila L48] NUOB_PSEE4 - NADH-quinone oxidoreductase subunit B OS=Pseudomonas entomophila (strain L48) GN=nuoB PE=3 SV=1 NUOB_PSEPG - NADH-quinone oxidoreductase subunit B OS=Pseudomonas putida (strain GB-1) GN=nuoB PE=3 SV=1	1.0E-81	[1..225]	[1..225]
tr\|F2KIP6\|F2KIP6... - NADH-quinone oxidoreductase subunit B OS=Pseudomonas brassicacearum (strain NFM421) GN=nuoB PE=3 SV=... gi\|9719438 - gi\|9719438\|gb\|AAF97798.1\|AF281148_2 NADH dehydrogenase I subunit B [Pseudomonas fluorescens]	5.0E-81	[1..225]	[1..224]
NUOB_PSEF5 - NADH-quinone oxidoreductase subunit B OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=nuo...	6.0E-81	[1..225]	[1..224]
NUOB_PSE14 - NADH-quinone oxidoreductase subunit B OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Rac... gi\|213925138, gi... - gi\|213970034\|ref\|ZP_03398166.1\| NADH dehydrogenase subunit B [Pseudomonas syringae pv. tomato T1], g... gi\|237800544 - gi\|237800544\|ref\|ZP_04589005.1\| NADH dehydrogenase subunit B [Pseudomonas syringae pv. oryzae str. 1... tr\|F3G8T7\|F3G8T7... - NADH-quinone oxidoreductase subunit B OS=Pseudomonas syringae pv. pisi str. 1704B GN=nuoB PE=3 SV=1 NUOB_PSESM - NADH-quinone oxidoreductase subunit B OS=Pseudomonas syringae pv. tomato GN=nuoB PE=3 SV=1 NUOB_PSESM - NADH-quinone oxidoreductase subunit B OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=nuoB PE=...	6.0E-81	[1..225]	[1..224]
NUOB_PSEPF - NADH-quinone oxidoreductase subunit B OS=Pseudomonas fluorescens (strain Pf0-1) GN=nuoB PE=3 SV=1	1.0E-80	[1..225]	[1..224]
NUOB_PSEU2 - NADH-quinone oxidoreductase subunit B OS=Pseudomonas syringae pv. syringae (strain B728a) GN=nuoB PE...	2.0E-80	[1..225]	[1..224]
gi\|89105751, gi\|... - gi\|89105751\|ref\|ZP_01178265.1\| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-... gi\|149291953, gi... - gi\|149365540\|ref\|ZP_01887575.1\| NADH dehydrogenase I chain B [Yersinia pestis CA88-4125], gi\|1492919... NUOB_YERPA - NADH-quinone oxidoreductase subunit B OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=nuoB PE=3 S... NUOB_YERPP - NADH-quinone oxidoreductase subunit B OS=Yersinia pestis (strain Pestoides F) GN=nuoB PE=3 SV=1 NUOB_YERPN - NADH-quinone oxidoreductase subunit B OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=nuoB PE=3 ... NUOB_YERPE - NADH-quinone oxidoreductase subunit B OS=Yersinia pestis GN=nuoB PE=3 SV=1 gi\|45442154, gi\|... - gi\|45442154\|ref\|NP_993693.1\| NADH dehydrogenase subunit B [Yersinia pestis biovar Microtus str. 9100... gi\|21958425, gi\|... - gi\|22125526\|ref\|NP_668949.1\| NADH dehydrogenase subunit B [Yersinia pestis KIM], gi\|21958425\|gb\|AAM8... gi\|115348251, gi... - gi\|218929640\|ref\|YP_002347515.1\| NADH dehydrogenase subunit B [Yersinia pestis CO92], gi\|16122772\|re... NUOB_YERPS - NADH-quinone oxidoreductase subunit B OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=... NUOB_YERE8 - NADH-quinone oxidoreductase subunit B OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain N... gi\|238794606, gi... - gi\|77976401\|ref\|ZP_00831892.1\| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-... gi\|77975478 - gi\|77975478\|ref\|ZP_00831013.1\| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-... gi\|238784999, gi... - gi\|77957602\|ref\|ZP_00821653.1\| COG0377: NADH:ubiquinone oxidoreductase 20 kD subunit and related Fe-... NUOB_YERPS - NADH-quinone oxidoreductase subunit B OS=Yersinia pseudotuberculosis GN=nuoB PE=3 SV=1 gi\|167422249, gi... - gi\|167422249\|ref\|ZP_02314002.1\| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orien... gi\|167051175, gi... - gi\|167398671\|ref\|ZP_02304195.1\| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiq... gi\|167470575 - gi\|167470575\|ref\|ZP_02335279.1\| NADH-quinone oxidoreductase, B subunit [Yersinia pestis FV-1] gi\|167424429, gi... - gi\|167424429\|ref\|ZP_02316182.1\| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Media... NUOB_YERPB - NADH-quinone oxidoreductase subunit B OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=n... NUOB_YERPY - NADH-quinone oxidoreductase subunit B OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=... NUOB_YERPG - NADH-quinone oxidoreductase subunit B OS=Yersinia pestis bv. Antiqua (strain Angola) GN=nuoB PE=3 SV... gi\|229838096, gi... - gi\|229838096\|ref\|ZP_04458255.1\| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar Orie... gi\|229895295, gi... - gi\|229895295\|ref\|ZP_04510469.1\| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis Pestoides A... gi\|229688204, gi... - gi\|229898656\|ref\|ZP_04513801.1\| NADH:ubiquinone oxidoreductase, chain B [Yersinia pestis biovar Orie... gi\|165925479, gi... - gi\|165925479\|ref\|ZP_02221311.1\| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Orien... gi\|238701790, gi... - gi\|238759963\|ref\|ZP_04621116.1\| NADH-quinone oxidoreductase subunit B [Yersinia aldovae ATCC 35236],... gi\|238763927, gi... - gi\|238763927\|ref\|ZP_04624884.1\| NADH-quinone oxidoreductase subunit B [Yersinia kristensenii ATCC 33... gi\|166213868, gi... - gi\|166213868\|ref\|ZP_02239903.1\| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiq... gi\|238798405, gi... - gi\|238798405\|ref\|ZP_04641886.1\| NADH-quinone oxidoreductase subunit B [Yersinia mollaretii ATCC 4396... gi\|165992860, gi... - gi\|166008478\|ref\|ZP_02229376.1\| NADH-quinone oxidoreductase, B subunit [Yersinia pestis biovar Antiq...	4.0E-80	[1..225]	[1..225]
gi\|23092541 - gi\|23092541\|gb\|AAN08352.1\| NADH dehydrogenase I subunit B [Photorhabdus temperata] gi\|23092541\|gb\|A... - NADH dehydrogenase I subunit B [Photorhabdus temperata]	2.0E-79	[1..225]	[1..224]

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Predicted Domain #1

Region A:
Residues: [1-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYKLTRIDP DAANDQYPIG ERETVADPLV EGQVHKNIFM GKLEDVLNST VNWGRKNSLW  60
   61 PYNFGLSCCY VEMTTAFTAP HDIARFGAEV IRASPRQADF MVIAGTCFIK MAPVIQRLYE 120
  121 QMLEPKWVIS MGSCANSGGM YDIYSVVQGV DKFLPVDVYI PGCPPRPEAF LQGLMLLQES 180
  181 IGQERRPLSW VVGDQGVYRA EMPAQKDLKR EQRIQVTNLR SPDEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.09691
Match:	2fug6
Description:	Crystal structure of the hydrophilic domain of respiratory complex I from Thermus thermophilus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
NADH dehydrogenase activity	13.9361001493201	bayes_pls_golite062009
NADH dehydrogenase (quinone) activity	12.823760326196	bayes_pls_golite062009
NADH dehydrogenase (ubiquinone) activity	12.8237449606378	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor	12.2946357205778	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	11.5463682902166	bayes_pls_golite062009
oxidoreductase activity	6.65509281399906	bayes_pls_golite062009
4 iron, 4 sulfur cluster binding	5.96984573452012	bayes_pls_golite062009
oxidoreduction-driven active transmembrane transporter activity	5.23135981388428	bayes_pls_golite062009
iron-sulfur cluster binding	4.95810064745013	bayes_pls_golite062009
metal cluster binding	4.95810064745013	bayes_pls_golite062009
oxidoreductase activity, acting on hydrogen as donor	1.94254997143399	bayes_pls_golite062009
catalytic activity	1.41356903593784	bayes_pls_golite062009
transporter activity	1.35313139085437	bayes_pls_golite062009
ferredoxin hydrogenase activity	1.17664896715936	bayes_pls_golite062009
oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor	1.17664896715936	bayes_pls_golite062009
transmembrane transporter activity	1.14096979892017	bayes_pls_golite062009
binding	0.918018251061961	bayes_pls_golite062009
active transmembrane transporter activity	0.3569377519136	bayes_pls_golite062009
primary active transmembrane transporter activity	0.345046820478722	bayes_pls_golite062009
protein binding	0.241603585422086	bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors	0.100407685917506	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: