YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11352441
Organism:	Pseudomonas aeruginosa
Length:	328 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11352441.

Description	E-value	Query Range	Subject Range
gi\|49087950 - gi\|49087950\|gb\|AAT51515.1\| PA2254 [synthetic construct]	0.0	[1..318]	[1..318]
gi\|107101700 - gi\|107101700\|ref\|ZP_01365618.1\| hypothetical protein PaerPA_01002744 [Pseudomonas aeruginosa PACS2] gi\|218771998, gi... - gi\|218891772\|ref\|YP_002440639.1\| pyoverdine biosynthesis protein PvcA [Pseudomonas aeruginosa LESB58... gi\|126167202, gi... - gi\|84321028\|ref\|ZP_00969393.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Pseudomonas aeru... gi\|254240694, gi... - gi\|84327290\|ref\|ZP_00975311.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Pseudomonas aeru...	0.0	[1..318]	[1..318]
gi\|116050201, gi... - gi\|32042380\|ref\|ZP_00139963.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Pseudomonas aeru...	0.0	[1..318]	[1..318]
gi\|150961889, gi... - gi\|94416552\|ref\|ZP_01296377.1\| hypothetical protein PaerP_01001633 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..318]	[1..318]
gi\|3212172 - gi\|3212172\|gb\|AAC21671.1\| PvcA [Pseudomonas aeruginosa] gi\|3212172\|gb\|AA... - PvcA [Pseudomonas aeruginosa]	0.0	[1..318]	[1..317]
gi\|255665796, gi... - gi\|83716637\|ref\|YP_438431.1\| pyoverdine chromophore biosynthetic protein PvcA [Burkholderia thailand...	0.0	[6..322]	[6..323]
gi\|52211610, gi\|... - gi\|53721196\|ref\|YP_110181.1\| siderophore biosynthesis-related protein [Burkholderia pseudomallei K96... gi\|167848181 - gi\|167848181\|ref\|ZP_02473689.1\| pyoverdine chromophore biosynthetic protein PvcA [Burkholderia pseud... gi\|82530602, gi\|... - gi\|82530602\|ref\|ZP_00889831.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Burkholderia pse... gi\|167896740 - gi\|167896740\|ref\|ZP_02484142.1\| pyoverdine chromophore biosynthetic protein PvcA [Burkholderia pseud... gi\|254213597, gi... - gi\|90293231\|ref\|ZP_01212834.1\| hypothetical protein Bpse17_02002099 [Burkholderia pseudomallei 1710a... gi\|254189562, gi... - gi\|67756740\|ref\|ZP_00495621.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Burkholderia pse... gi\|242313769, gi... - gi\|82537876\|ref\|ZP_00896871.1\| hypothetical protein Bpse110_02000758 [Burkholderia pseudomallei 1106... gi\|167921361 - gi\|167921361\|ref\|ZP_02508452.1\| pyoverdine chromophore biosynthetic protein PvcA [Burkholderia pseud... gi\|254299618, gi... - gi\|83678159\|ref\|ZP_00939891.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Burkholderia pse... gi\|217422872, gi... - gi\|217422872\|ref\|ZP_03454374.1\| pyoverdine chromophore biosynthetic protein PvcA [Burkholderia pseud... gi\|100124444, gi... - gi\|67760825\|ref\|ZP_00499541.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Burkholderia pse... gi\|76818400, gi\|... - gi\|76818400\|ref\|YP_336836.1\| pyoverdine chromophore biosynthetic protein PvcA [Burkholderia pseudoma...	0.0	[6..315]	[6..315]
gi\|126224365, gi... - gi\|67738489\|ref\|ZP_00489152.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Burkholderia pse...	0.0	[6..315]	[6..315]
gi\|166999144, gi... - gi\|243064703\|gb\|EES46889.1\| pyoverdine chromophore biosynthetic protein PvcA [Burkholderia mallei PR... gi\|160697322, gi... - gi\|254176280\|ref\|ZP_04882938.1\| pyoverdine chromophore biosynthetic protein PvcA [Burkholderia malle... gi\|83623973, gi\|... - gi\|83623973\|ref\|ZP_00934230.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Burkholderia mal... gi\|67636390, gi\|... - gi\|67636390\|ref\|ZP_00435336.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Burkholderia mal... gi\|147745697, gi... - gi\|83620853\|ref\|ZP_00931268.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Burkholderia mal... gi\|67642553, gi\|... - gi\|67642553\|ref\|ZP_00441308.1\| PvcA [Burkholderia mallei GB8 horse 4], gi\|238523722\|gb\|EEP87159.1\| P... gi\|126239852, gi... - gi\|67648834\|ref\|ZP_00447061.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Burkholderia mal... gi\|53715963, gi\|... - gi\|53715963\|ref\|YP_106452.1\| pyoverdine chromophore biosynthetic protein PvcA [Burkholderia mallei A... gi\|84520847, gi\|... - gi\|84520847\|ref\|ZP_01007984.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Burkholderia mal... gi\|85063788 - gi\|85063788\|ref\|ZP_01024642.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Burkholderia mal... gi\|148025125, gi... - gi\|87317806\|ref\|ZP_01098812.1\| COG3207: Pyoverdine/dityrosine biosynthesis protein [Burkholderia mal... gi\|124381548, gi... - gi\|124381548\|ref\|YP_001025027.1\| pyoverdine chromophore biosynthetic protein PvcA [Burkholderia mall...	0.0	[6..315]	[6..315]
gi\|99911936, gi\|... - gi\|99911936\|ref\|ZP_01318738.1\| hypothetical protein Bpse1_03001900 [Burkholderia pseudomallei 1655],...	0.0	[6..315]	[6..315]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYAIAEDTLP ARVLKELLLY RRRYPEHRQS ASEADEIRRI EQVQLPRIAA FIEAGEPIEF  60
   61 VLPAFPAKSP NPGKVLDSRP DMAERLSLSF LNHLCQRIQL FYAPGAKITV CSDGRVFGDL 120
  121 VRIGDAHISA YQDALRLMIE EI

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [143-328]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GATHIGVFNL EDVRAFEAQR DNHEQLRQLL IGGYAEPLES IRETLLASEE GLLLYRAITR  60
   61 FLYEDGLTPD YQGSKTALQR DAKERAYGVI QRSWAWGALL ADQFPRAIRL SIHPQPADSL 120
  121 KFGIHMMPTR DDWLTPWHGV AVNTEDRFVL MKRSEVLELG GELVQINGQP SHYRLPARAA 180
  181 RRAAVA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits