YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11351851
Organism:	Pseudomonas aeruginosa
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11351851.

Description	E-value	Query Range	Subject Range
gi\|254235167, gi... - gi\|84321131\|ref\|ZP_00969493.1\| COG1028: Dehydrogenases with different specificities (related to shor...	4.0E-74	[1..286]	[1..286]
gi\|194551554, gi... - gi\|84327440\|ref\|ZP_00975459.1\| COG1028: Dehydrogenases with different specificities (related to shor... gi\|218891907, gi... - gi\|218891907\|ref\|YP_002440774.1\| putative short-chain dehydrogenase [Pseudomonas aeruginosa LESB58],...	4.0E-74	[1..286]	[1..286]
gi\|49083294 - gi\|49083294\|gb\|AAT50995.1\| PA2142 [synthetic construct]	4.0E-74	[1..286]	[1..286]
gi\|115585304, gi... - gi\|32042249\|ref\|ZP_00139832.1\| COG1028: Dehydrogenases with different specificities (related to shor...	5.0E-74	[1..286]	[1..286]
gi\|107101566 - gi\|107101566\|ref\|ZP_01365484.1\| hypothetical protein PaerPA_01002609 [Pseudomonas aeruginosa PACS2]	7.0E-74	[1..286]	[1..286]
gi\|53688164 - gi\|53688164\|ref\|ZP_00110036.2\| COG1028: Dehydrogenases with different specificities (related to shor...	4.0E-73	[1..286]	[66..355]
gi\|75908644, gi\|... - gi\|75908644\|ref\|YP_322940.1\| Short-chain dehydrogenase/reductase SDR [Anabaena variabilis ATCC 29413...	5.0E-73	[1..286]	[1..285]
gi\|53610584 - ref\|ZP_00342080.1\| COG1028: Dehydrogenases with different specificities (related to short-chain alco... gi\|67085961, gi\|... - gi\|67156772\|ref\|ZP_00418269.1\| Short-chain dehydrogenase/reductase SDR [Azotobacter vinelandii AvOP]...	5.0E-73	[1..286]	[1..286]
gi\|56419248, gi\|... - gi\|56419248\|ref\|YP_146566.1\| short chain dehydrogenase/reductase family oxidoreductase [Geobacillus ...	1.0E-70	[3..285]	[4..286]
gi\|17232674, gi\|... - gi\|17232674\|ref\|NP_489222.1\| oxidoreductase [Nostoc sp. PCC 7120], gi\|17134321\|dbj\|BAB76881.1\| oxido... gi\|25283433 - pir\|\|AF2453 oxidoreductase alr5182 [imported] - Nostoc sp. (strain PCC 7120)	1.0E-70	[1..286]	[1..285]

Back

Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEQRQTLPA QHQDQRPGHE SQMQPKPEFV SADYRPAAKL EGKVALVTGG DSGIGRAVAV  60
   61 AFAREKADVV LVYLDENEDA AKTREIIESL GRQCLAFAGD VADAGFCRQV VDTLRQKWGR 120
  121 LDVLVNNAGE QHPQARLEDI SEEQWEKTFR TNIFGMFQLT KAALPLMGKG GAIINTTSIT 180
  181 AYKGNPQLID YSSTKGAITS FTRSLSMNLV NRGIRVNAVA PGPIWTPLIP STFSAEKVAH 240
  241 FGADTPMGRP GQPEELAASY VYLACNDSSY VSGQVLHVNG GTVVNG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	63.39794
Match:	2hq1A
Description:	No description for 2hq1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits