YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9947956, gi\|1...
Organism:	Pseudomonas aeruginosa PAO1
Length:	191 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9947956, gi|1....

Description	E-value	Query Range	Subject Range
gi\|58580483, gi\|... - gi\|58580483\|ref\|YP_199499.1\| putative transporter [Xanthomonas oryzae pv. oryzae KACC10331], gi\|5842...	8.0E-50	[1..190]	[90..279]
gi\|15778837 - gi\|15778837\|gb\|AAL07520.1\| putative transporter [Xanthomonas oryzae pv. oryzae]	3.0E-47	[1..190]	[51..240]
gi\|49082556 - gi\|49082556\|gb\|AAT50678.1\| PA1958 [synthetic construct]	2.0E-46	[1..191]	[1..191]
gi\|54308623, gi\|... - gi\|54308623\|ref\|YP_129643.1\| putative nicotinamide mononucleotide transporter [Photobacterium profun...	8.0E-46	[1..187]	[24..235]
gi\|90327377, gi\|... - gi\|90411815\|ref\|ZP_01219824.1\| putative nicotinamide mononucleotide transporter [Photobacterium prof...	2.0E-44	[1..187]	[24..235]
gi\|254225893, gi... - gi\|75820342\|ref\|ZP_00750392.1\| COG3201: Nicotinamide mononucleotide transporter [Vibrio cholerae V51... gi\|254223022, gi... - gi\|75822880\|ref\|ZP_00752434.1\| COG3201: Nicotinamide mononucleotide transporter [Vibrio cholerae RC3... tr\|D7HAS8\|D7HAS8... - PnuC protein OS=Vibrio cholerae RC385 GN=VCRC385_02447 PE=4 SV=1	4.0E-44	[1..186]	[24..233]
gi\|77956876 - gi\|77956876\|ref\|ZP_00820951.1\| COG3201: Nicotinamide mononucleotide transporter [Yersinia bercovieri...	4.0E-44	[1..186]	[22..232]
gi\|48731533, gi\|... - gi\|77458825\|ref\|YP_348331.1\| nicotinamide mononucleotide transporter [Pseudomonas fluorescens Pf0-1]...	4.0E-44	[1..187]	[1..187]
gi\|238798992, gi... - gi\|77960617\|ref\|ZP_00824481.1\| COG3201: Nicotinamide mononucleotide transporter [Yersinia mollaretii...	8.0E-44	[1..186]	[22..232]
gi\|153212857, gi... - gi\|153212857\|ref\|ZP_01948474.1\| pnuC protein [Vibrio cholerae 1587], gi\|124116235\|gb\|EAY35055.1\| pnu... gi\|227014761, gi... - gi\|75824933\|ref\|ZP_00754369.1\| COG3201: Nicotinamide mononucleotide transporter [Vibrio cholerae O39...	1.0E-43	[1..186]	[24..233]

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Predicted Domain #1

Region A:
Residues: [1-191]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPLELFAAS LGAIAVYLTV RQNPWCWPIG LVMVALYAWI FFEVKLYSDM LLQMVYAALQ  60
   61 LYGWWQWTRG GQDHDGRSVS RLNAAQRLYG LGAGLVGSVA LGYLMANHTD AASPWWDAGL 120
  121 TAFSLVAQCW MAQKRLECWA LWIAVDVLFV ALFASKALYL TAALYALFTL LAIHGWRTWR 180
  181 RDPALREGVA A

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	74.79588
Match:	PF04973.3
Description:	No description for PF04973.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits