YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11352600
Organism:	Pseudomonas aeruginosa
Length:	128 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11352600.

Description	E-value	Query Range	Subject Range
gi\|83372565, gi\|... - gi\|83372565\|ref\|ZP_00917345.1\| similar to Succinate dehydrogenase/fumarate reductase cytochrome b su...	7.0E-34	[1..127]	[38..164]
gi\|49077638 - gi\|49077638\|gb\|AAT49701.1\| PA1581 [synthetic construct]	1.0E-33	[1..128]	[1..128]
gi\|2137070 - gi\|2137070\|pir\|\|I48085 integral membrane protein CII-3 - Chinese hamster (fragment)	1.0E-31	[3..124]	[48..171]
gi\|77866289, gi\|... - gi\|77954807\|ref\|ZP_00819193.1\| similar to Succinate dehydrogenase/fumarate reductase cytochrome b su...	1.0E-31	[4..128]	[50..174]
gi\|25520736 - pir\|\|F97676 succinate dehydrogenase membrane anchor chain (AF007569) [imported] - Agrobacterium tume... gi\|15889901, gi\|... - gi\|15889901\|ref\|NP_355582.1\| hypothetical protein AGR_C_4794 [Agrobacterium tumefaciens str. C58], g...	3.0E-31	[4..127]	[38..161]
gi\|29418059 - gi\|29418059\|gb\|AAO39685.1\| succinate dehydrogenase cytochrome b-556 subunit; SdhC [Enterobacter cloa...	5.0E-31	[1..128]	[31..159]
gi\|114316918, gi... - gi\|114328744\|ref\|YP_745901.1\| succinate dehydrogenase cytochrome b556 subunit [Granulibacter bethesd...	7.0E-31	[7..125]	[73..191]
gi\|28852638, gi\|... - gi\|28869397\|ref\|NP_792016.1\| succinate dehydrogenase, cytochrome b556 subunit [Pseudomonas syringae ... tr\|Q884A1\|Q884A1... - Succinate dehydrogenase, cytochrome b556 subunit OS=Pseudomonas syringae pv. tomato (strain DC3000) ...	8.0E-31	[5..128]	[1..124]
gi\|67156801, gi\|... - gi\|67156801\|ref\|ZP_00418298.1\| Succinate dehydrogenase, cytochrome b subunit [Azotobacter vinelandii...	1.0E-30	[3..128]	[2..127]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKAVNSKRP VNLDLRTIKL PVTAYTSILH RISGVILFLG IAVLLFALDK SLSSEEGFEQ  60
   61 VKACLTSPLA KLVIWGLLSA LLYHLVAGVR HLVMDAGVGE TLEGGKRGSK IVIAIAVVLI 120
  121 VLAGVWVW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1nekC
Description:	Succinate dehydrogenase subunit SdhC
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	10.6133558935785	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	7.24661342841192	bayes_pls_golite062009
oxidoreductase activity	5.99989196344185	bayes_pls_golite062009
electron carrier activity	4.50772505551128	bayes_pls_golite062009
binding	1.1076219212629	bayes_pls_golite062009
catalytic activity	0.971825536251904	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: