YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11347783
Organism:	Pseudomonas aeruginosa
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11347783.

Description	E-value	Query Range	Subject Range
gi\|66046968, gi\|... - gi\|66046968\|ref\|YP_236809.1\| hypothetical protein Psyr_3740 [Pseudomonas syringae pv. syringae B728a...	5.0E-45	[1..134]	[1..134]
gi\|49077214 - gi\|49077214\|gb\|AAT49646.1\| PA1439 [synthetic construct]	3.0E-43	[1..135]	[1..135]
gi\|71557160, gi\|... - gi\|71736607\|ref\|YP_273770.1\| hypothetical protein PSPPH_1516 [Pseudomonas syringae pv. phaseolicola ...	2.0E-42	[1..132]	[1..132]
gi\|94416916, gi\|... - gi\|94416916\|ref\|ZP_01296739.1\| hypothetical protein PaerP_01001460 [Pseudomonas aeruginosa PA7], gi\|...	4.0E-42	[1..135]	[1..135]
tr\|Q886D7\|Q886D7... - Uncharacterized protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_1642 PE=4 SV=1 gi\|28868848, gi\|... - gi\|28868848\|ref\|NP_791467.1\| hypothetical protein PSPTO_1642 [Pseudomonas syringae pv. tomato str. D...	4.0E-42	[1..130]	[1..130]
gi\|84328354 - gi\|84328354\|ref\|ZP_00976361.1\| COG2832: Uncharacterized protein conserved in bacteria [Pseudomonas a... gi\|84321828 - gi\|84321828\|ref\|ZP_00970181.1\| COG2832: Uncharacterized protein conserved in bacteria [Pseudomonas a... gi\|53727690 - gi\|53727690\|ref\|ZP_00139054.2\| COG2832: Uncharacterized protein conserved in bacteria [Pseudomonas a...	9.0E-39	[14..135]	[1..122]
gi\|48729647, gi\|... - gi\|77457693\|ref\|YP_347198.1\| hypothetical protein Pfl01_1466 [Pseudomonas fluorescens Pf0-1], gi\|773...	1.0E-37	[4..130]	[2..128]
gi\|70728969, gi\|... - gi\|70728969\|ref\|YP_258703.1\| hypothetical protein PFL_1577 [Pseudomonas fluorescens Pf-5], gi\|683432...	5.0E-36	[1..130]	[1..130]
gi\|68531595, gi\|... - gi\|94309166\|ref\|YP_582376.1\| hypothetical protein Rmet_0221 [Ralstonia metallidurans CH34], gi\|93353...	3.0E-35	[8..133]	[13..139]
gi\|95111907 - gi\|95111907\|emb\|CAK16631.1\| conserved hypothetical protein; putative signal peptide [Pseudomonas ent... gi\|104782920, gi... - gi\|95111907\|emb\|CAK16631.1\| conserved hypothetical protein; putative signal peptide [Pseudomonas ent...	6.0E-35	[13..130]	[1..118]

Back

Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQREIRPSA RAWVRYSLQA VGFLSVALGV IGIFLPVLPT TPFLLLAAAC FMRSSPRFYH  60
   61 WLVGHPRLGP WIRDYLDGEG IPLKGKVYAI GLMWASIALS CYLVRRPWAQ GFMLTSAVLV 120
  121 SIYILRQKTR PPHDA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	38.39794
Match:	PF04304.4
Description:	No description for PF04304.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits