YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|116049030, gi...
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	598 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116049030, gi....

Description	E-value	Query Range	Subject Range
gi\|254239470, gi... - gi\|84328573\|ref\|ZP_00976577.1\| COG1766: Flagellar biosynthesis/type III secretory pathway lipoprotei...	0.0	[1..598]	[1..598]
gi\|150959298, gi... - gi\|94415965\|ref\|ZP_01295797.1\| hypothetical protein PaerP_01002294 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..598]	[1..597]
gi\|896313 - gi\|896313\|gb\|AAB06801.1\| flagellar MS ring	0.0	[1..598]	[1..599]
gi\|68343329, gi\|... - gi\|70729030\|ref\|YP_258764.1\| flagellar MS-ring protein [Pseudomonas fluorescens Pf-5], gi\|68343329\|g...	0.0	[1..598]	[1..595]
gi\|95111808 - gi\|95111808\|emb\|CAK16532.1\| flagellar basal-body M-ring protein FliF [Pseudomonas entomophila L48] gi\|104782821, gi... - gi\|95111808\|emb\|CAK16532.1\| flagellar basal-body M-ring protein FliF [Pseudomonas entomophila L48], ...	0.0	[1..598]	[1..592]
gi\|77381766, gi\|... - gi\|77457763\|ref\|YP_347268.1\| flagellar MS-ring protein [Pseudomonas fluorescens Pf0-1], gi\|77381766\|...	0.0	[1..598]	[1..595]
gi\|148546737, gi... - gi\|82738784\|ref\|ZP_00901609.1\| Flagellar FliF M-ring protein [Pseudomonas putida F1], gi\|82714176\|gb...	0.0	[1..598]	[1..592]
gi\|26991058, gi\|... - gi\|26991058\|ref\|NP_746483.1\| flagellar MS-ring protein [Pseudomonas putida KT2440], gi\|24986091\|gb\|A...	0.0	[1..598]	[1..592]
gi\|71734724, gi\|... - gi\|71734724\|ref\|YP_275541.1\| flagellar MS-ring protein [Pseudomonas syringae pv. phaseolicola 1448A]...	0.0	[1..598]	[1..594]
gi\|213967561, gi... - gi\|213967561\|ref\|ZP_03395709.1\| flagellar M-ring protein FliF [Pseudomonas syringae pv. tomato T1], ... gi\|28869162, gi\|... - gi\|28869162\|ref\|NP_791781.1\| flagellar MS-ring protein [Pseudomonas syringae pv. tomato str. DC3000]... tr\|Q884X8\|Q884X8... - Flagellar M-ring protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=fliF PE=3 SV=1	0.0	[1..598]	[1..594]

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Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADALIDSQV PAKSGGAGML KKSFPGLSFL DNLSEMTMLR QIGLLVGLAA SVAIGFAVVL  60
   61 WSQQPDYKPL YGSLNGVDAN RVVEALTAAD IPYKVEPNSG ALLVKADDLG RARMKVASAG 120
  121 VAPTDNNVGF EILDKEQALG TSQFMEATNY RRGLEGELAR TVSSLNNVKA ARVHLAIPKS 180
  181 SVFVRDDRKP SASVLVELYP GRSLEPSQVM AIVNLVATSV PELDKSQVTV VDQKGNLLSD 240
  241 QQELSEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1yj7A
Description:	Crystal structure of enteropathogenic E.coli (EPEC) type III secretion system protein EscJ
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [248-469]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TMAGKQFDFT RRMEGLLTQR VHNILQPVLG NGRYKAEVSA DVDFSAVEST SEMYNPDQPA  60
   61 LRSEQRNNEE RQNSSGPQGV PGALSNQPPG PASAPQQATA SAPADYVAPG QPLKDANGQT 120
  121 IIDPKTGKPE LAPYPTDKRD QTTRNYELDR SISYTKQQQG RLRRLSVAVV LDDQMKVDAK 180
  181 TGEVSHQPWS ADELARFTRL VQDSVGYDAS RGDSVSVINA PF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [470-598]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APAQAEEIDS IPFYSQPWFW DIVKQVLGVL FILVLVFGVL RPVLSNITGG GKGKSLAGGG  60
   61 GRDGDLALGE SGLEGSLADD RVSIGGPSSI LLPSPTEGYD AQLNAIKNLV AQDPGRVAQV 120
  121 VKEWINADE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits