YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11347712
Organism:	Pseudomonas aeruginosa
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11347712.

Description	E-value	Query Range	Subject Range
ARFB_PSEPU - Peptidyl-tRNA hydrolase ArfB OS=Pseudomonas putida GN=arfB PE=3 SV=1	5.0E-39	[1..137]	[1..137]
gi\|70728998, gi\|... - gi\|70728998\|ref\|YP_258732.1\| hypothetical protein PFL_1606 [Pseudomonas fluorescens Pf-5], gi\|683432...	6.0E-39	[1..137]	[17..153]
gi\|77381724, gi\|... - gi\|77457721\|ref\|YP_347226.1\| hypothetical protein Pfl01_1494 [Pseudomonas fluorescens Pf0-1], gi\|773...	1.0E-38	[1..137]	[1..137]
gi\|49077264 - gi\|49077264\|gb\|AAT49658.1\| PA0868 [synthetic construct]	2.0E-38	[1..137]	[1..137]
gi\|95110180 - gi\|95110180\|emb\|CAK14887.1\| putative protein chain release factor B [Pseudomonas entomophila L48] gi\|104781193, gi... - gi\|95110180\|emb\|CAK14887.1\| putative protein chain release factor B [Pseudomonas], gi\|104781193\|ref\|...	2.0E-38	[1..137]	[1..137]
gi\|94418032, gi\|... - gi\|94418032\|ref\|ZP_01297848.1\| hypothetical protein PaerP_01000181 [Pseudomonas aeruginosa PA7], gi\|...	5.0E-38	[1..137]	[1..137]
gi\|24984552, gi\|... - gi\|26989665\|ref\|NP_745090.1\| hypothetical protein PP_2946 [Pseudomonas putida KT2440], gi\|24984552\|g...	7.0E-38	[1..137]	[1..137]
tr\|F3G728\|F3G728... - Uncharacterized protein OS=Pseudomonas syringae pv. pisi str. 1704B GN=PSYPI_10893 PE=4 SV=1 gi\|63257515, gi\|... - gi\|66046808\|ref\|YP_236649.1\| hypothetical protein Psyr_3579 [Pseudomonas syringae pv. syringae B728a...	3.0E-37	[1..137]	[1..137]
gi\|71554526, gi\|... - gi\|71733973\|ref\|YP_275683.1\| hypothetical protein PSPPH_3535 [Pseudomonas syringae pv. phaseolicola ...	5.0E-37	[1..137]	[18..154]
gi\|148547661, gi... - gi\|82735860\|ref\|ZP_00898722.1\| peptidyl-tRNA hydrolase domain protein [Pseudomonas putida F1], gi\|82...	1.0E-36	[1..137]	[1..137]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLIISNAVHL PDHEIELNAI RAQGAGGQNV NKVSSAVHLR FDIQASSLPP FYKERLLALN  60
   61 DQRISGDGVV VIKAQQYRTQ EQNREDALER LAELIRSVAK VQKARRPTKP TRGSQKRRLD 120
  121 GKAKRGAVKA GRGKVDF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.0
Match:	2jvaA
Description:	No description for 2jvaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits