YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11350617
Organism:	Pseudomonas aeruginosa
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11350617.

Description	E-value	Query Range	Subject Range
gi\|49075120 - gi\|49075120\|gb\|AAT49449.1\| PA0857 [synthetic construct]	3.0E-39	[1..101]	[1..101]
gi\|94418044, gi\|... - gi\|94418044\|ref\|ZP_01297860.1\| hypothetical protein PaerP_01000193 [Pseudomonas aeruginosa PA7], gi\|...	8.0E-39	[1..101]	[1..101]
gi\|116048780, gi... - gi\|32040867\|ref\|ZP_00138450.1\| COG0271: Stress-induced morphogen (activity unknown) [Pseudomonas aer...	1.0E-38	[1..101]	[1..101]
gi\|77384315, gi\|... - gi\|77460312\|ref\|YP_349819.1\| transcriptional regulator BolA [Pseudomonas fluorescens Pf0-1], gi\|7738...	3.0E-35	[1..98]	[1..99]
gi\|5139535 - gi\|5139535\|emb\|CAB45536.1\| BolA protein [Pseudomonas fluorescens]	4.0E-35	[1..98]	[1..99]
gi\|70731676, gi\|... - gi\|70731676\|ref\|YP_261418.1\| bolA protein [Pseudomonas fluorescens Pf-5], gi\|68345975\|gb\|AAY93581.1\|...	3.0E-34	[1..98]	[1..99]
gi\|23103771, gi\|... - gi\|67155165\|ref\|ZP_00416793.1\| BolA-like protein [Azotobacter vinelandii AvOP], ref\|ZP_00090245.1\| C... gi\|67086966, gi\|... - gi\|67155165\|ref\|ZP_00416793.1\| BolA-like protein [Azotobacter vinelandii AvOP], gi\|67086966\|gb\|EAM06...	1.0E-33	[1..99]	[1..101]
gi\|23472145, gi\|... - gi\|66046888\|ref\|YP_236729.1\| BolA-like protein [Pseudomonas syringae pv. syringae B728a], gi\|6325759...	3.0E-32	[1..95]	[1..96]
gi\|26988488, gi\|... - gi\|26988488\|ref\|NP_743913.1\| BolA family protein [Pseudomonas putida KT2440], gi\|24983252\|gb\|AAN6737... gi\|82740176, gi\|... - gi\|82740176\|ref\|ZP_00902926.1\| bolA protein [Pseudomonas putida F1], gi\|82712747\|gb\|EAP47911.1\| bolA... tr\|E4RDU5\|E4RDU5... - BolA OS=Pseudomonas putida (strain BIRD-1) GN=bolA PE=3 SV=1	5.0E-32	[1..96]	[1..97]
gi\|71558411, gi\|... - gi\|71737858\|ref\|YP_275821.1\| bolA protein [Pseudomonas syringae pv. phaseolicola 1448A], gi\|71558411...	8.0E-32	[1..95]	[1..96]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMRDRIQTA LQPLDPQHVE VLDESHMHSR GLETHFKVVL VSPQFAGLNA VKRHQKVYAT  60
   61 LGGLMGEFHA LALHTFTPEE WSQAAVPASP TCRGGSKHDI P

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.221849
Match:	2dhmA
Description:	No description for 2dhmA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits