YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11352398
Organism:	Pseudomonas aeruginosa
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11352398.

Description	E-value	Query Range	Subject Range
gi\|150961212, gi... - gi\|94418200\|ref\|ZP_01298016.1\| hypothetical protein PaerP_01000354 [Pseudomonas aeruginosa PA7], gi\|...	2.0E-38	[1..149]	[1..149]
gi\|54310531, gi\|... - gi\|54310531\|ref\|YP_131551.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium pr...	1.0E-37	[13..149]	[13..152]
gi\|49075826 - gi\|49075826\|gb\|AAT49500.1\| PA0681 [synthetic construct]	2.0E-37	[1..149]	[1..149]
gi\|77383404, gi\|... - gi\|77459401\|ref\|YP_348908.1\| general secretion pathway protein G [Pseudomonas fluorescens Pf0-1], gi...	2.0E-37	[2..149]	[5..152]
gi\|90324230, gi\|... - gi\|90414688\|ref\|ZP_01222659.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium ...	2.0E-37	[13..149]	[2..141]
gi\|91190218, gi\|... - gi\|91224972\|ref\|ZP_01260231.1\| general secretion pathway protein G [Vibrio alginolyticus 12G01], gi\|...	4.0E-37	[9..149]	[1..143]
gi\|116184927, gi... - gi\|75855650\|ref\|ZP_00763295.1\| COG2165: Type II secretory pathway, pseudopilin PulG [Vibrio sp. Ex25...	4.0E-37	[9..149]	[1..143]
gi\|28805118, gi\|... - gi\|28896910\|ref\|NP_796515.1\| general secretion pathway protein G [Vibrio parahaemolyticus RIMD 22106... gi\|28805118 - gi\|28805118\|dbj\|BAC58399.1\| general secretion pathway protein G [Vibrio parahaemolyticus RIMD 221063... gi\|149746473, gi... - gi\|153839996\|ref\|ZP_01992663.1\| general secretion pathway protein G [Vibrio parahaemolyticus AQ3810]...	9.0E-37	[9..149]	[1..143]
gi\|90581088, gi\|... - gi\|90581088\|ref\|ZP_01236888.1\| putative type II secretory pathway, pseudopilin EpsG [Vibrio angustum... gi\|89049778, gi\|... - gi\|89074490\|ref\|ZP_01160967.1\| putative type II secretory pathway, pseudopilin EpsG [Photobacterium ...	1.0E-36	[13..149]	[2..141]
gi\|218890699, gi... - gi\|218890699\|ref\|YP_002439563.1\| general secretion pathway protein G [Pseudomonas aeruginosa LESB58]... gi\|126168002, gi... - gi\|254236071\|ref\|ZP_04929394.1\| general secretion pathway protein G [Pseudomonas aeruginosa C3719], ... gi\|254241798, gi... - gi\|254241798\|ref\|ZP_04935120.1\| general secretion pathway protein G [Pseudomonas aeruginosa 2192], g... gi\|15598297, gi\|... - gi\|9949211\|gb\|AAG06489.1\|AE004734_7 general secretion pathway protein G [Pseudomonas aeruginosa PAO1... gi\|11348577 - gi\|11348577\|pir\|\|E83258 general secretion pathway protein G PA3101 [imported] - Pseudomonas aerugino...	2.0E-36	[5..148]	[1..147]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVVQFSSSP KGHRGQRGFT LIEIMVVVVI LGILAAMVVP KVLDRPDQAR ATAARQDISG  60
   61 LMQALKLYRL DQGRYPSQAQ GLKVLAERPA DASASNWRSY LERLPNDPWG KPYQYLNPGV 120
  121 NGEIDVFSLG ADGQPGGEGI NADIGSWQL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.0
Match:	1ay2A
Description:	STRUCTURE OF THE FIBER-FORMING PROTEIN PILIN AT 2.6 ANGSTROMS RESOLUTION
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein transporter activity	8.7545256796234	bayes_pls_golite062009
transporter activity	2.74044424168852	bayes_pls_golite062009
substrate-specific transporter activity	2.55698329173896	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: