YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|116054378, gi...
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|116054378, gi....

Description	E-value	Query Range	Subject Range
gi\|71735354, gi\|... - gi\|71735354\|ref\|YP_272975.1\| OsmC/Ohr family protein [Pseudomonas syringae pv. phaseolicola 1448A], ...	6.0E-40	[1..139]	[63..201]
tr\|Q88A00\|Q88A00... - OsmC/Ohr family protein OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_0597 PE=4 SV=1 gi\|28867825, gi\|... - gi\|28867825\|ref\|NP_790444.1\| OsmC/Ohr family protein [Pseudomonas syringae pv. tomato str. DC3000], ... gi\|213967627, gi... - gi\|213967627\|ref\|ZP_03395774.1\| OsmC/Ohr family protein [Pseudomonas syringae pv. tomato T1], gi\|213...	1.0E-38	[1..140]	[1..140]
gi\|49076606 - gi\|49076606\|gb\|AAT49580.1\| PA0653 [synthetic construct]	2.0E-38	[1..140]	[1..140]
gi\|66047803, gi\|... - gi\|66047803\|ref\|YP_237644.1\| OsmC-like protein [Pseudomonas syringae pv. syringae B728a], gi\|6325851...	4.0E-38	[1..140]	[1..140]
gi\|67155294 - gi\|67155294\|ref\|ZP_00416922.1\| OsmC-like protein [Azotobacter vinelandii AvOP] gi\|67155294, gi\|... - gi\|67155294\|ref\|ZP_00416922.1\| OsmC-like protein [Azotobacter vinelandii AvOP], gi\|67087095\|gb\|EAM06...	1.0E-37	[1..140]	[1..140]
gi\|70732906, gi\|... - gi\|70732906\|ref\|YP_262677.1\| OsmC/Ohr family protein [Pseudomonas fluorescens Pf-5], gi\|68347205\|gb\|...	2.0E-37	[1..140]	[54..193]
gi\|26987166, gi\|... - gi\|26987166\|ref\|NP_742591.1\| OsmC family protein [Pseudomonas putida KT2440], gi\|24981800\|gb\|AAN6605... tr\|E4RE58\|E4RE58... - OsmC family protein OS=Pseudomonas putida (strain BIRD-1) GN=PPUBIRD1_0462 PE=4 SV=1 tr\|I7C3P0\|I7C3P0... - OsmC family protein OS=Pseudomonas putida (strain DOT-T1E) GN=yhfA PE=4 SV=1 gi\|126360027, gi... - gi\|167031471\|ref\|YP_001666702.1\| OsmC family protein [Pseudomonas putida GB-1], gi\|166857959\|gb\|ABY9... gi\|170723935, gi... - gi\|170723935\|ref\|YP_001751623.1\| OsmC family protein [Pseudomonas putida W619], gi\|169761938\|gb\|ACA7... gi\|82739484, gi\|... - gi\|82739484\|ref\|ZP_00902285.1\| conserved hypothetical protein [Pseudomonas putida F1], gi\|82713440\|g...	1.0E-36	[1..140]	[1..140]
gi\|95108712 - gi\|95108712\|emb\|CAK13406.1\| conserved hypothetical protein; OsmC/Ohr family protein [Pseudomonas ent... gi\|95108712, gi\|... - gi\|95108712\|emb\|CAK13406.1\| conserved hypothetical protein; OsmC/Ohr family protein [Pseudomonas ent...	5.0E-36	[1..139]	[1..139]
gi\|77461331, gi\|... - gi\|77461331\|ref\|YP_350838.1\| OsmC-like protein [Pseudomonas fluorescens Pf0-1], gi\|77385334\|gb\|ABA76...	8.0E-36	[1..140]	[1..140]
gi\|92113042, gi\|... - gi\|92113042\|ref\|YP_572970.1\| OsmC-like protein [Chromohalobacter salexigens DSM 3043], gi\|91796132\|g...	2.0E-35	[1..138]	[1..138]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKARIQWAGE AMFLGESGSG HVVVMDGPPD HGGRNLGVRP MEMVLIGLGG CTNFDVVSIL  60
   61 KKARQPVESC EAFLEAERAD EEPKVFTKIH VHFVVKGRGL KEAQVKRAVE LSAEKYCSAS 120
  121 IMLGRGGVEI THDYEIVELG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1ml8A
Description:	Hypothetical protein in CRP region
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.0998435033416311	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: