YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9946514, gi\|1...
Organism:	Pseudomonas aeruginosa PAO1
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9946514, gi|1....

Description	E-value	Query Range	Subject Range
gi\|116054367, gi... - gi\|32043831\|ref\|ZP_00141093.1\| COG4672: Phage-related protein [Pseudomonas aeruginosa UCBPP-PA14], g... gi\|107099608 - gi\|107099608\|ref\|ZP_01363526.1\| hypothetical protein PaerPA_01000622 [Pseudomonas aeruginosa PACS2] gi\|254243715, gi... - gi\|84324135\|ref\|ZP_00972199.1\| COG4672: Phage-related protein [Pseudomonas aeruginosa 2192], gi\|2542...	0.0	[1..231]	[1..231]
gi\|84318837, gi\|... - gi\|84318837\|ref\|ZP_00967254.1\| COG4672: Phage-related protein [Pseudomonas aeruginosa C3719], gi\|254...	0.0	[1..231]	[1..231]
gi\|94413356, gi\|... - gi\|94413356\|ref\|ZP_01293242.1\| hypothetical protein PaerP_01004868 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..231]	[1..231]
gi\|9634136, gi\|6... - gi\|9634136\|ref\|NP_037678.1\| gp18 [Enterobacteria phage HK022], gi\|6863128\|gb\|AAF30369.1\|AF069308_17 ...	0.0	[1..230]	[1..250]
gi\|49081936 - gi\|49081936\|gb\|AAT50368.1\| PA0638 [synthetic construct]	0.0	[1..231]	[1..231]
TIPL_BPN15 - Tail tip protein L OS=Enterobacteria phage N15 GN=gene 18 PE=3 SV=1	0.0	[1..230]	[1..250]
gi\|149292365, gi... - gi\|149365952\|ref\|ZP_01887987.1\| putative phage protein [Yersinia pestis CA88-4125], gi\|149292365\|gb\|... gi\|167401467, gi... - gi\|167401467\|ref\|ZP_02306964.1\| phage minor tail protein L [Yersinia pestis biovar Antiqua str. UG05... gi\|145210000, gi... - gi\|145598304\|ref\|YP_001162380.1\| hypothetical protein YPDSF_1007 [Yersinia pestis Pestoides F], gi\|1... gi\|166211207, gi... - gi\|166211207\|ref\|ZP_02237242.1\| phage minor tail protein L [Yersinia pestis biovar Antiqua str. B420... gi\|167426599, gi... - gi\|167426599\|ref\|ZP_02318352.1\| phage minor tail protein L [Yersinia pestis biovar Mediaevalis str. ... gi\|166961990, gi... - gi\|167420295\|ref\|ZP_02312048.1\| phage minor tail protein L [Yersinia pestis biovar Orientalis str. M... gi\|167466947 - gi\|167466947\|ref\|ZP_02331651.1\| phage minor tail protein L [Yersinia pestis FV-1] gi\|22126082, gi\|... - gi\|22126082\|ref\|NP_669505.1\| phage tail protein [Yersinia pestis KIM], gi\|21959038\|gb\|AAM85756.1\|AE0... gi\|25301991 - pir\|\|AI0258 probable phage protein YPO2122 [imported] - Yersinia pestis (strain CO92) gi\|115347836, gi... - gi\|218929225\|ref\|YP_002347100.1\| hypothetical protein YPO2122 [Yersinia pestis CO92], gi\|16122357\|re... gi\|165939397, gi... - gi\|89104371\|ref\|ZP_01176916.1\| COG4672: Phage-related protein [Yersinia pestis biovar Orientalis str... gi\|108807479, gi... - gi\|108807479\|ref\|YP_651395.1\| hypothetical protein YPA_1483 [Yersinia pestis Antiqua], gi\|108779392\|... gi\|165991678, gi... - gi\|166009123\|ref\|ZP_02230021.1\| phage minor tail protein L [Yersinia pestis biovar Antiqua str. E197... gi\|108775404, gi... - gi\|229902047\|ref\|ZP_04517168.1\| putative phage protein [Yersinia pestis Nepal516], gi\|229680943\|gb\|E... gi\|165920329, gi... - gi\|165927715\|ref\|ZP_02223547.1\| phage minor tail protein L [Yersinia pestis biovar Orientalis str. F... gi\|77634475, gi\|... - gi\|77634475\|ref\|ZP_00796575.1\| COG4672: Phage-related protein [Yersinia pestis Angola], gi\|162421326... gi\|229897541, gi... - gi\|229897541\|ref\|ZP_04512697.1\| putative phage protein [Yersinia pestis biovar Orientalis str. PEXU2... gi\|229898186, gi... - gi\|229898186\|ref\|ZP_04513334.1\| putative phage protein [Yersinia pestis biovar Orientalis str. India...	0.0	[1..230]	[1..249]
gi\|9634175, gi\|6... - gi\|9634175\|ref\|NP_037712.1\| Gp18 [Enterobacteria phage HK97], gi\|6901604\|gb\|AAF31107.1\| Gp18 [Bacter...	0.0	[1..230]	[1..251]
gi\|17546413 - gi\|17546413\|ref\|NP_519815.1\| phage HK022 GP18-like protein [Ralstonia solanacearum GMI1000] gi\|17428710 - gi\|17428710\|emb\|CAD15396.1\| probable phage hk022 gp18-related protein [Ralstonia solanacearum GMI100...	0.0	[1..230]	[1..232]
gi\|40218247, gi\|... - gi\|46402103\|ref\|YP_006597.1\| Gp17 [Klebsiella phage phiKO2], gi\|40218247\|gb\|AAR83033.1\| Gp17 [Bacter...	0.0	[1..230]	[1..250]

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Predicted Domain #1

Region A:
Residues: [1-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTITADDQTL EPGALVRLFD LDCTGFGGEM LRFHGHLQQG PIHWQGNAYQ AWPLEARGFE  60
   61 QRGDGRASSP TLSVGNIDGS ISALCLFFDG LVGARLIVRE TYAHYLDAAN FAEGNPQADP 120
  121 SQERLNIWFL EQKTAENSVQ VTWELSAPPD FQGQQIPARQ ITSLCHWCIT NEYRGQDCNY 180
  181 TGTAMFDADG NPVDDPALDR CGGRVSDCKL RFGADNPLSH GGFAGAGLVR M

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits