YRC Public Data Repository - Protein Structure Prediction

Protein:	GCP_PSEAE
Organism:	Pseudomonas aeruginosa
Length:	341 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GCP_PSEAE.

Description	E-value	Query Range	Subject Range
TSAD_HISS2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Histophilus somni (strain 2336) GN=tsaD PE=3 SV=1	3.0E-99	[1..341]	[1..342]
gi\|23466489, gi\|... - gi\|23466489\|ref\|ZP_00122077.1\| COG0533: Metal-dependent proteases with possible chaperone activity [...	4.0E-99	[1..341]	[1..342]
gi\|15603103, gi\|... - gi\|15603103\|ref\|NP_246175.1\| O-sialoglycoprotein endopeptidase [Pasteurella multocida subsp. multoci...	8.0E-99	[1..341]	[1..342]
gi\|59712856, gi\|... - gi\|59712856\|ref\|YP_205632.1\| peptidase [Vibrio fischeri ES114], gi\|59480957\|gb\|AAW86744.1\| predicted...	4.0E-98	[1..341]	[1..337]
TSAD_ACTP2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 5b (strai... gi\|32035197 - gi\|32035197\|ref\|ZP_00135231.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... TSAD_ACTPJ - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 3 (strain... TSAD_ACTP7 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain...	4.0E-98	[1..341]	[1..342]
gi\|68057326, gi\|... - gi\|68249127\|ref\|YP_248239.1\| O-sialoglycoprotein endopeptidase [Haemophilus influenzae 86-028NP], gi... gi\|144984027 - gi\|144984027\|gb\|EDJ91464.1\| O-sialoglycoprotein endopeptidase [Haemophilus influenzae R3021] gi\|145630292 - gi\|145630292\|ref\|ZP_01786073.1\| O-sialoglycoprotein endopeptidase [Haemophilus influenzae 22.4-21]	2.0E-97	[1..341]	[1..342]
TSAD_PHOPR - tRNA N6-adenosine threonylcarbamoyltransferase OS=Photobacterium profundum (strain SS9) GN=tsaD PE=3... TSAD_PHOPR, GCP_... - tRNA N6-adenosine threonylcarbamoyltransferase OS=Photobacterium profundum GN=tsaD PE=3 SV=1, Probab...	4.0E-97	[1..341]	[1..337]
GCP_HAEIN - Probable O-sialoglycoprotein endopeptidase OS=Haemophilus influenzae GN=gcp PE=3 SV=1 TSAD_HAEIN - tRNA N6-adenosine threonylcarbamoyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11...	8.0E-97	[1..341]	[1..342]
gi\|90327169, gi\|... - gi\|90411911\|ref\|ZP_01219919.1\| putative O-sialoglycoprotein endopeptidase [Photobacterium profundum ...	9.0E-97	[1..341]	[1..337]
gi\|107099566 - gi\|107099566\|ref\|ZP_01363484.1\| hypothetical protein PaerPA_01000579 [Pseudomonas aeruginosa PACS2]	1.0E-96	[1..341]	[1..341]

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Predicted Domain #1

Region A:
Residues: [1-341]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLGLETSC DETGVALYDS ERGLLADALF SQIDLHRVYG GVVPELASRD HVKRMLPLIR  60
   61 QVLDESGCTP ADIDAIAYTA GPGLVGALLV GASCAQAMAF AWGVPAVGVH HMEGHLLAPM 120
  121 LEEQPPRFPF VALLVSGGHT QLVRVDGIGR YQLLGESVDD AAGEAFDKTA KLIGLGYPGG 180
  181 PEIARLAERG TPGRFVFPRP MTDRPGLDFS FSGLKTFTLN TWQRCVEAGD DSEQTRCDIA 240
  241 LAFQTAVVET LLIKCRRALK QTGLKNLVIA GGVSANQALR SGLEKMLGEM KGQVFYARPR 300
  301 FCTDNGAMIA YAGCQRLLAG QHDGPAISVQ PRWPMESLPA V

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.09691
Match:	2ivnA
Description:	No description for 2ivnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits