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View Structure Prediction Details

Protein: BIOB_PSEAE
Organism: Pseudomonas aeruginosa
Length: 352 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for BIOB_PSEAE.

Description E-value Query
Range		 Subject
Range
gi|85693260, gi|... - gi|85712880|ref|ZP_01043921.1| Biotin synthase [Idiomarina baltica OS145], gi|85693260|gb|EAQ31217.1...
 8.0E-97 [1..349] [1..349]
gi|126169206, gi... - gi|84318723|ref|ZP_00967143.1| COG0502: Biotin synthase and related enzymes [Pseudomonas aeruginosa ...
 4.0E-96 [1..352] [1..352]
gi|49086966 - gi|49086966|gb|AAT51401.1| PA0500 [synthetic construct]
 5.0E-96 [1..352] [1..352]
BIOB_PSEAB - Biotin synthase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=bioB PE=3 SV=1
 7.0E-96 [1..352] [1..352]
BIOB_PSEA7 - Biotin synthase OS=Pseudomonas aeruginosa (strain PA7) GN=bioB PE=3 SV=1
 5.0E-95 [1..352] [1..352]
BIOB_PSEP1 - Biotin synthase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=bioB PE=3 SV=1
 4.0E-93 [1..352] [1..352]
BIOB_PSEPK - Biotin synthase OS=Pseudomonas putida (strain KT2440) GN=bioB PE=3 SV=1
 1.0E-92 [1..352] [1..352]
BIOB_PSEE4 - Biotin synthase OS=Pseudomonas entomophila (strain L48) GN=bioB PE=3 SV=1
gi|95113022 - gi|95113022|emb|CAK17750.1| biotin synthetase [Pseudomonas entomophila L48]
 2.0E-92 [1..352] [1..352]
gi|226942753, gi... - gi|67156983|ref|ZP_00418345.1| Biotin synthase [Azotobacter vinelandii AvOP], gi|67085660|gb|EAM0513...
gi|67156983, gi|... - gi|67156983|ref|ZP_00418345.1| Biotin synthase [Azotobacter vinelandii AvOP], ref|ZP_00090881.2| COG...
 3.0E-92 [7..352] [6..351]
gi|89094135, gi|... - gi|89094135|ref|ZP_01167078.1| biotin synthase; contains an iron-sulfur cluster and PLP [Oceanospiri...
 3.0E-92 [7..349] [5..347]

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Predicted Domain #1
Region A:
Residues: [1-352] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATASVATR HDWSLAEVRA LFEQPFNDLL FQAQTVHRAH FDPNRVQVST LLSIKTGACP  60
   61 EDCKYCPQSG HYNTGLDKEK LMEVQKVLEA AAEAKAIGST RFCMGAAWKH PSAKDMPYVL 120
  121 EMVKGVKKLG LETCMTLGRL TQEQTQALAD AGLDYYNHNL DTSPEFYGNI ITTRTYSERL 180
  181 QTLAYVREAG MKICSGGILG MGESVDDRAG LLIQLANLPE HPESVPINML VKVKGTPLAE 240
  241 EKDVDPFDFI RTLAVARIMM PKSHVRLSAG REQMNEQMQA LAFMAGANSI FYGEKLLTTK 300
  301 NPQAEKDMQL FARLGIKPEE REEHADEVHQ AAIEQALVEQ RESKLFYNAA SA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 90.0
Match: 1r30A
Description: The Crystal Structure of Biotin Synthase, an S-Adenosylmethionine-Dependent Radical Enzyme
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
biotin synthase activity 4.96431653338581 bayes_pls_golite062009
radical SAM enzyme activity 4.81217611621334 bayes_pls_golite062009
sulfurtransferase activity 3.43375708969779 bayes_pls_golite062009
transferase activity, transferring sulfur-containing groups 2.79703059227143 bayes_pls_golite062009
coproporphyrinogen oxidase activity 1.98937742831419 bayes_pls_golite062009
catalytic activity 1.48331922124015 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor 1.37188743230327 bayes_pls_golite062009
binding 1.19681284943457 bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors 1.18901545014659 bayes_pls_golite062009
transferase activity 0.685192555939835 bayes_pls_golite062009
oxidoreductase activity 0.593156857804038 bayes_pls_golite062009
protein binding 0.374124957429525 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle