YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9945975, gi\|1...
Organism:	Pseudomonas aeruginosa PAO1
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9945975, gi|1....

Description	E-value	Query Range	Subject Range
gi\|126196629, gi... - gi\|84324527\|ref\|ZP_00972584.1\| COG3613: Nucleoside 2-deoxyribosyltransferase [Pseudomonas aeruginosa...	8.0E-54	[2..170]	[40..208]
gi\|126169546, gi... - gi\|84318463\|ref\|ZP_00966887.1\| COG3613: Nucleoside 2-deoxyribosyltransferase [Pseudomonas aeruginosa...	9.0E-54	[2..170]	[40..208]
gi\|115589087, gi... - gi\|32043302\|ref\|ZP_00140564.1\| COG3613: Nucleoside 2-deoxyribosyltransferase [Pseudomonas aeruginosa...	2.0E-53	[1..172]	[1..172]
gi\|107099135 - gi\|107099135\|ref\|ZP_01363053.1\| hypothetical protein PaerPA_01000144 [Pseudomonas aeruginosa PACS2]	2.0E-53	[2..170]	[40..208]
gi\|152984082, gi... - gi\|94416058\|ref\|ZP_01295889.1\| hypothetical protein PaerP_01002138 [Pseudomonas aeruginosa PA7], gi\|...	3.0E-53	[1..171]	[1..171]
gi\|11348788 - pir\|\|H83627 hypothetical protein PA0144 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9945974, gi\|1... - gi\|9945974\|gb\|AAG03534.1\|AE004452_6 hypothetical protein PA0144 [Pseudomonas aeruginosa PAO1], gi\|15...	2.0E-52	[2..170]	[40..208]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAIYLAGPD VFRPDAEAHG ETLKALCAEF GFVGLYPLDH ALPADIREPA AQAAWIYRAN  60
   61 VGLIERADCV LANLEPFRGS EPDSGTAFEV GYALALGKPV YAYLSDAGAY AERLARLAPE 120
  121 WLGEHPGEDR DGWQLEGFGL PLNLMLAVPS RLVAGGPREA LRRLAEELGG NA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.045757
Match:	2a0kA
Description:	Crystal structure of Nucleoside 2-deoxyribosyltransferase from Trypanosoma brucei at 1.8 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.819209389808157	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: