YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11348788
Organism:	Pseudomonas aeruginosa
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11348788.

Description	E-value	Query Range	Subject Range
gi\|126169546, gi... - gi\|84318463\|ref\|ZP_00966887.1\| COG3613: Nucleoside 2-deoxyribosyltransferase [Pseudomonas aeruginosa...	2.0E-61	[1..208]	[1..208]
gi\|126196629, gi... - gi\|84324527\|ref\|ZP_00972584.1\| COG3613: Nucleoside 2-deoxyribosyltransferase [Pseudomonas aeruginosa...	2.0E-61	[1..208]	[1..208]
gi\|107099135 - gi\|107099135\|ref\|ZP_01363053.1\| hypothetical protein PaerPA_01000144 [Pseudomonas aeruginosa PACS2]	4.0E-61	[1..208]	[1..208]
gi\|115589086, gi... - gi\|53726976\|ref\|ZP_00140562.2\| COG3613: Nucleoside 2-deoxyribosyltransferase [Pseudomonas aeruginosa...	4.0E-56	[28..208]	[28..208]
gi\|150959052, gi... - gi\|94416059\|ref\|ZP_01295890.1\| hypothetical protein PaerP_01002139 [Pseudomonas aeruginosa PA7], gi\|...	2.0E-53	[28..205]	[28..205]
gi\|11348789 - pir\|\|A83628 hypothetical protein PA0145 [imported] - Pseudomonas aeruginosa (strain PAO1) gi\|9945975, gi\|1... - gi\|9945975\|gb\|AAG03535.1\|AE004452_7 hypothetical protein PA0145 [Pseudomonas aeruginosa PAO1], gi\|15...	3.0E-50	[42..208]	[4..170]

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Predicted Domain #1

Region A:
Residues: [1-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRSNGSSSR RTFLRLAALL LPAGALLGSL PGVRAAARPR KLYLAGPDVF RADAVAHGEA  60
   61 LKALCARYGF EGLYPLDNAL PKQLAEPREQ AAWIYRANIG LIERADAVLA NLNFFRGAEP 120
  121 DSGTAFEVGY ATALGKPVYG YVDDAGSYAE RIRRHAPELI GEDPTRDRDG MTLEEFGLPL 180
  181 NLMLAVPATL VVGDAEQALR QLASRRHG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.0
Match:	2a0kA
Description:	Crystal structure of Nucleoside 2-deoxyribosyltransferase from Trypanosoma brucei at 1.8 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.819209389808157	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: