YRC Public Data Repository - Protein Structure Prediction

Protein:	Y1575_AQUAE
Organism:	Aquifex aeolicus VF5
Length:	249 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1575_AQUAE.

Description	E-value	Query Range	Subject Range
Y2326_GEODF - Probable transcriptional regulatory protein Geob_2326 OS=Geobacter daltonii (strain DSM 22248 / JCM ...	378.0	[0..1]	[248..1]
Y743_GEOMG - Probable transcriptional regulatory protein Gmet_0743 OS=Geobacter metallireducens (strain GS-15 / A...	378.0	[0..1]	[248..1]
YA74_GEOSL, Y107... - (P62036) Hypothetical UPF0082 protein GSU1074, UPF0082 protein GSU1074 OS=Geobacter sulfurreducens G... Y1074_GEOSL - Probable transcriptional regulatory protein GSU1074 OS=Geobacter sulfurreducens (strain ATCC 51573 /...	375.0	[0..1]	[248..1]
gi\|21730736 - gi\|21730736\|pdb\|1LFP\|A Chain A, Crystal Structure Of A Conserved Hypothetical Protein Aq1575 From Aq...	375.0	[0..2]	[249..2]
Y4410_PSEPF - Probable transcriptional regulatory protein Pfl01_4410 OS=Pseudomonas fluorescens (strain Pf0-1) GN=...	374.0	[0..1]	[249..1]
Y479_MAGMM - Probable transcriptional regulatory protein Mmc1_0479 OS=Magnetococcus marinus (strain ATCC BAA-1437...	373.0	[0..1]	[248..1]
gi\|23102775, gi\|... - gi\|67158820\|ref\|ZP_00419638.1\| Protein of unknown function DUF28 [Azotobacter vinelandii AvOP], ref\|... gi\|67084489, gi\|... - gi\|67158820\|ref\|ZP_00419638.1\| Protein of unknown function DUF28 [Azotobacter vinelandii AvOP], gi\|6...	373.0	[0..1]	[248..1]
Y1220_METCA - UPF0082 protein MCA1220 OS=Methylococcus capsulatus GN=MCA1220 PE=3 SV=1 Y1220_METCA - Probable transcriptional regulatory protein MCA1220 OS=Methylococcus capsulatus (strain ATCC 33009 /...	372.0	[0..1]	[249..1]
Y1407_PSEU2 - Probable transcriptional regulatory protein Psyr_1407 OS=Pseudomonas syringae pv. syringae (strain B... tr\|F3G1F8\|F3G1F8... - Probable transcriptional regulatory protein PSYPI_00070 OS=Pseudomonas syringae pv. pisi str. 1704B ...	372.0	[0..1]	[249..1]
Y3775_PSE14 - Probable transcriptional regulatory protein PSPPH_3775 OS=Pseudomonas savastanoi pv. phaseolicola (s...	371.0	[0..1]	[249..1]

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Predicted Domain #1

Region A:
Residues: [1-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGHSHWAQI KHKKAKVDAQ RGKLFSKLIR EIIVATRLGG PNPEFNPRLR TAIEQAKKAN  60
   61 MPWENIERAI KKGAGELEGE QFEEVIYEGY APGGVAVMVL ATTDNRNRTT SEVRHVFTKH 120
  121 GGNLGASGCV SYLFERKGYI EVPAKEVSEE ELLEKAIEVG AEDVQPGEEV HIIYTVPEEL 180
  181 YEVKENLEKL GVPIEKAQIT WKPISTVQIN DEETAQKVIK LLNALEELDD VQQVIANFEI 240
  241 PEEILQKVG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	107.0
Match:	1lfpA
Description:	Hypothetical protein aq1575
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits