YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7443088
Organism:	Aquifex aeolicus
Length:	262 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7443088.

Description	E-value	Query Range	Subject Range
gi\|89211345, gi\|... - gi\|89211345\|ref\|ZP_01189714.1\| Protein of unknown function DUF1078 [Halothermothrix orenii H 168], g...	274.0	[0..1]	[262..1]
gi\|67677244, gi\|... - gi\|92114096\|ref\|YP_574024.1\| flagellar basal-body rod FlgG [Chromohalobacter salexigens DSM 3043], g...	270.0	[0..1]	[260..1]
gi\|4982109, gi\|1... - gi\|4982109\|gb\|AAD36609.1\|AE001800_19 flagellar basal-body rod protein FlgG [Thermotoga maritima MSB8... gi\|7443089 - pir\|\|B72243 flagellar basal-body rod protein FlgG - Thermotoga maritima (strain MSB8) gi\|119886237, gi... - gi\|148270380\|ref\|YP_001244840.1\| flagellar basal-body rod protein FlgG [Thermotoga petrophila RKU-1]...	267.0	[0..1]	[262..1]
gi\|32262631, gi\|... - gi\|32266580\|ref\|NP_860612.1\| flagellar basal body rod protein FlgG [Helicobacter hepaticus ATCC 5144...	265.0	[0..1]	[262..1]
gi\|58582198, gi\|... - gi\|58582198\|ref\|YP_201214.1\| flagellar biosynthesis cell-distal portion of basal-body rod [Xanthomon...	265.0	[0..1]	[259..81]
gi\|34558104 - gi\|34558104\|ref\|NP_907919.1\| flagellar basal body rod protein FlgG [Wolinella succinogenes DSM 1740] gi\|34483822 - gi\|34483822\|emb\|CAE10819.1\| FLAGELLAR BASAL-BODY ROD PROTEIN DISTAL ROD PROTEIN [Wolinella succinoge...	262.0	[0..1]	[262..1]
gi\|71484066, gi\|... - gi\|71550721\|ref\|ZP_00670810.1\| Flagellar basal body rod protein:Protein of unknown function DUF1078 ...	262.0	[0..1]	[260..1]
gi\|94427542, gi\|... - gi\|94500243\|ref\|ZP_01306776.1\| flagellar basal-body rod protein FlgG [Oceanobacter sp. RED65], gi\|94...	261.0	[0..1]	[259..1]
gi\|86157777, gi\|... - gi\|86157777\|ref\|YP_464562.1\| flagellar basal-body rod FlgG [Anaeromyxobacter dehalogenans 2CP-C], gi...	261.0	[0..2]	[261..7]
gi\|189018758, gi... - gi\|189026183\|ref\|YP_001933955.1\| flagellar basal-body rod protein [Treponema pallidum subsp. pallidu... gi\|15639944, gi\|... - gi\|3323281\|gb\|AAC65915.1\| flagellar basal-body rod protein (flgG-1) [Treponema pallidum subsp. palli... gi\|7443084 - pir\|\|C71259 probable flagellar basal-body rod protein (flgG-1) - syphilis spirochete	260.0	[0..1]	[262..1]

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Predicted Domain #1

Region A:
Residues: [1-87]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRALWTSAS GMTAQQTNLD VISHNMANVN TVGYKKMRAT FQDLLYQTVE EPGAPTSPTT  60
   61 RSPSGFQIGL GTYVSDTYGI FTQGNLT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.864	0.021	flagellum organization	a.24.15	FAD-dependent thiol oxidase

Predicted Domain #2

Region A:
Residues: [88-262]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KTDNQLDIAI QGDGFFKIVL PDGTIAYTRN GQFRLDSEGR IVNSDGYPLD PEITIPADAI  60
   61 SVSIAADGTV SVLRQGATEV EEVGRIELAK FVNPAGLRRI GNNLYIQTTA SGEPIIDNPG 120
  121 NQGLGTLLQG YLESSNVNIV EEMVNLIIAQ RAYEFNTKGI QAADEMLSQA ANLRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.221849
Match:	1wlgA
Description:	Crystal structure of FlgE31, a major fragment of the hook protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits