YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RS4_AQUAE
Organism: Aquifex aeolicus VF5
Length: 211 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS4_AQUAE.

Description E-value Query
Range		 Subject
Range
RR4_FUNHY - 30S ribosomal protein S4, chloroplastic OS=Funaria hygrometrica GN=rps4 PE=3 SV=1
 304.0 [0..1] [210..1]
RR4_PHYPA - 30S ribosomal protein S4, chloroplastic OS=Physcomitrella patens subsp. patens GN=rps4 PE=3 SV=1
RR4_PHYPA - 30S ribosomal protein S4, chloroplastic OS=Physcomitrella patens subsp. patens GN=rps4 PE=3 SV=1
 302.0 [0..1] [210..1]
gi|63101091 - gi|63101091|gb|AAY33170.1| small ribosomal protein 4 [Platyneuron laticostatum]
 301.0 [0..1] [210..1]
RR4_CYABU - 30S ribosomal protein S4, chloroplastic OS=Cyathophorum bulbosum GN=rps4 PE=3 SV=1
 301.0 [0..1] [210..1]
gi|63191663 - gi|63191663|gb|AAY34793.1| small ribosomal protein subunit 4 [Dixonia thamnioides]
 301.0 [0..1] [210..1]
RR4_DIPFO - 30S ribosomal protein S4, chloroplastic OS=Diphyscium foliosum GN=rps4 PE=3 SV=1
 300.0 [0..1] [210..1]
gi|3098148 - gi|3098148|gb|AAC15522.1| small ribosomal protein 4 [Encalypta rhaptocarpa]
 299.0 [0..4] [210..1]
gi|29422405 - gi|29422405|gb|AAO84598.1| small ribosomal protein 4 [Breutelia chrysocoma]
 299.0 [0..4] [210..2]
RR4_HYLSP - 30S ribosomal protein S4, chloroplastic OS=Hylocomium splendens GN=rps4 PE=3 SV=1
 299.0 [0..1] [210..1]
RR4_LEUSC - 30S ribosomal protein S4, chloroplastic OS=Leucodon sciuroides GN=rps4 PE=3 SV=1
 299.0 [0..1] [210..1]

Back

Predicted Domain #1
Region A:
Residues: [1-211] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRYIGPWVK LDRRFGVVVS GKKSAPKILA RRNYPPGQHG RKYGRRKKLT EYGLRLMEKQ  60
   61 KLKFLYGGLR EKQFKKYFDM ASKSKENTGE MLLQYLERRL DNVVYRLGFA STRRQARQLV 120
  121 AHGHVLVNGK KVNIPSYLVE PGDVIEIKEK SRDIPFIKEN LENVDPRSIP SWLELDKDNF 180
  181 RGRVVRLPEN VQEYLEIPIN LQYIVEFYSK V

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 69.522879
Match: 1vs5D
Description: No description for 1vs5D was found.

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 9.39690558966302 bayes_pls_golite062009
structural molecule activity 8.82127733244958 bayes_pls_golite062009
RNA binding 1.78858120096157 bayes_pls_golite062009
nucleic acid binding 1.46320109129014 bayes_pls_golite062009
binding 1.39612080445111 bayes_pls_golite062009
protein binding 0.355025246110141 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle