YRC Public Data Repository - Protein Structure Prediction

Protein:	RNP3_PYRHO
Organism:	Pyrococcus horikoshii OT3
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNP3_PYRHO.

Description	E-value	Query Range	Subject Range
RNP3_METMA - Ribonuclease P protein component 3 OS=Methanosarcina mazei GN=rnp3 PE=3 SV=1 RNP3_METMA - Ribonuclease P protein component 3 OS=Methanosarcina mazei (strain ATCC BAA-159 / DSM 3647 / Goe1 / ...	193.0	[0..11]	[211..16]
gi\|114631777 - gi\|114631777\|ref\|XP_521557.2\| PREDICTED: ribonuclease P (30kD) [Pan troglodytes]	189.0	[0..9]	[210..4]
RNP3_METAC - Ribonuclease P protein component 3 OS=Methanosarcina acetivorans (strain ATCC 35395 / DSM 2834 / JCM... RNP3_METAC - Ribonuclease P protein component 3 OS=Methanosarcina acetivorans GN=rnp3 PE=3 SV=1	188.0	[0..11]	[211..16]
gi\|50749506 - gi\|50749506\|ref\|XP_421667.1\| PREDICTED: similar to Ribonuclease P protein subunit p30 (RNaseP protei...	186.0	[0..8]	[210..180]
gi\|109089903 - gi\|109089903\|ref\|XP_001087609.1\| PREDICTED: ribonuclease P (30kD) [Macaca mulatta]	186.0	[0..9]	[210..4]
gi\|73997973 - gi\|73997973\|ref\|XP_534959.2\| PREDICTED: similar to Ribonuclease P protein subunit p30 (RNaseP protei...	186.0	[0..9]	[210..4]
RPP30 - ribonuclease P/MRP 30kDa subunit gi\|60656497, gi\|... - gi\|60656497\|gb\|AAX32812.1\| ribonuclease P/MRP 30kDa subunit [synthetic construct], gi\|123999957\|gb\|A...	184.0	[0..9]	[210..4]
RPP30_BOVIN - Ribonuclease P protein subunit p30 OS=Bos taurus GN=RPP30 PE=2 SV=1	184.0	[0..9]	[210..4]
gi\|60653449 - gi\|60653449\|gb\|AAX29419.1\| ribonuclease P/MRP 30kDa subunit [synthetic construct]	184.0	[0..9]	[210..4]
gi\|148226070, gi... - gi\|52354780\|gb\|AAH82834.1\| LOC494740 protein [Xenopus laevis], gi\|148226070\|ref\|NP_001088047.1\| hypo...	181.0	[0..9]	[210..4]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGGGGVKFI EMDIRDKEAY ELAKEWFDEV VVSIKFNEEV DKEKLREARK EYGKVAILLS  60
   61 NPKPSLVRDT VQKFKSYLIY VESNDLRVIR YSIEKGVDAI ISPWVNRKDP GIDHVLAKLM 120
  121 VKKNVALGFS LRPLLYSNPY ERANLLRFMM KAWKLVEKYK VRRFLTSSAQ EKWDVRYPRD 180
  181 LISLGVVIGM EIPQAKASIS MYPEIILKRL KY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	42.522879
Match:	1v77A
Description:	Crystal structure of the PH1877 protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits